FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_STRFN (Actin-15A OS=Strongylocentrotus franciscanus PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS ++KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_PNECA (Actin-1 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 70/192 (36.46%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L         +L   PL +PK+ RE++ Q+MFETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG     A  R  + G DLT  L + L
Sbjct:    4 EIAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPALLTEAPL-NPKSNREKMTQIMFETFNTPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLNLAGRDLTDYLMKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_HELTB (Actin CyI, cytoplasmic OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS ++KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_HELER (Actin CyI, cytoplasmic OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS ++KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_HALRO (Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 71/189 (37.57%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L+K+G A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   10 AIVCDNGSGLVKSGFA-GDDAPRAVFPSTVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIARLDLAGRDLTDYLMKIL 196          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP1_YEAST (Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 64/204 (31.37%), Postives = 106/204 (51.96%), Query Frame = 1
Query:   82 EAAVVDAGSKLLKAGPAIPDQAPSM----VIPSQMKRVLEDGSSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLY 654
            +  V+D GS ++KAG +  ++  ++    V  ++  +V+ +G   +   T + +             P+  G + DWD+ME +  +VL   L  +   E  +L T+   +P   REQ+ Q++FETF++S  Y S  AVLSLYA GR +GC VD G G     P+ +G     +  R ++GG D+T+ L  +L K   S  +SL+
Sbjct:   13 QPVVIDNGSGIIKAGFSGEERPKALEYCLVGNTKYDKVMLEG---LQGDTFIGNNAQKLRGLLKLRYPIKHGVVEDWDSMELIWSYVLNEVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYVSNPAVLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIGGADITEQLQFQLRK---SAGVSLF 210          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_SCHPO (Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 69/192 (35.94%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E   L T+   +PK+ RE++ Q++FETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EIAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_STYCL (Actin, muscle OS=Styela clava PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 71/189 (37.57%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L+K+G A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH +Y  L      E   L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   10 AIVCDNGSGLVKSGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTMYNELRVAP-EEHPTLLTEAPHNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVMDAGDGVSHNVPIYEGYALPHAIARLDLAGRDLTDYLMKIL 196          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_CIOSA (Actin, muscle OS=Ciona savignyi PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 71/189 (37.57%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L+K+G A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   10 ALVCDNGSGLVKSGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVMDAGDGVSHNVPIYEGYALPHAIARLDLAGRDLTDYLMKIL 196          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTG_ANSAN (Actin, cytoplasmic 2 OS=Anser anser anser GN=ACTG1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 69/192 (35.94%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG    D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EIAALVIDNGSGMCKAGFG-RDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 193          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT1_STRFN8.628e-2137.04Actin-15A OS=Strongylocentrotus franciscanus PE=3 ... [more]
ACT1_PNECA8.628e-2136.46Actin-1 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT1_HELTB8.628e-2137.04Actin CyI, cytoplasmic OS=Heliocidaris tuberculata... [more]
ACT1_HELER8.628e-2137.04Actin CyI, cytoplasmic OS=Heliocidaris erythrogram... [more]
ACT1_HALRO8.628e-2137.57Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE... [more]
ARP1_YEAST1.127e-2031.37Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=... [more]
ACT_SCHPO1.127e-2035.94Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV... [more]
ACTM_STYCL1.127e-2037.57Actin, muscle OS=Styela clava PE=2 SV=1[more]
ACTM_CIOSA1.127e-2037.57Actin, muscle OS=Ciona savignyi PE=2 SV=1[more]
ACTG_ANSAN1.127e-2035.94Actin, cytoplasmic 2 OS=Anser anser anser GN=ACTG1... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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