FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTH_MOUSE (Actin, gamma-enteric smooth muscle OS=Mus musculus GN=Actg2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTH_HUMAN (Actin, gamma-enteric smooth muscle OS=Homo sapiens GN=ACTG2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTH_CHICK (Actin, gamma-enteric smooth muscle OS=Gallus gallus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTH_BOVIN (Actin, gamma-enteric smooth muscle OS=Bos taurus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTB_STRPU (Actin, cytoskeletal 1B OS=Strongylocentrotus purpuratus GN=CYIB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS ++KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPMEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTA_STRPU (Actin, cytoskeletal 1A OS=Strongylocentrotus purpuratus GN=CYIA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS ++KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPMEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 195
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTA_RABIT (Actin, aortic smooth muscle OS=Oryctolagus cuniculus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 195
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTA_MOUSE (Actin, aortic smooth muscle OS=Mus musculus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 195
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTA_HUMAN (Actin, aortic smooth muscle OS=Homo sapiens GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 195
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACTH_MOUSE1.472e-2038.10Actin, gamma-enteric smooth muscle OS=Mus musculus... [more]
ACTH_HUMAN1.472e-2038.10Actin, gamma-enteric smooth muscle OS=Homo sapiens... [more]
ACTH_CHICK1.472e-2038.10Actin, gamma-enteric smooth muscle OS=Gallus gallu... [more]
ACTH_BOVIN1.472e-2038.10Actin, gamma-enteric smooth muscle OS=Bos taurus G... [more]
ACTB_STRPU1.472e-2037.04Actin, cytoskeletal 1B OS=Strongylocentrotus purpu... [more]
ACTA_STRPU1.472e-2037.04Actin, cytoskeletal 1A OS=Strongylocentrotus purpu... [more]
ACTA_RAT1.472e-2038.10Actin, aortic smooth muscle OS=Rattus norvegicus G... [more]
ACTA_RABIT1.472e-2038.10Actin, aortic smooth muscle OS=Oryctolagus cunicul... [more]
ACTA_MOUSE1.472e-2038.10Actin, aortic smooth muscle OS=Mus musculus GN=Act... [more]
ACTA_HUMAN1.472e-2038.10Actin, aortic smooth muscle OS=Homo sapiens GN=ACT... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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