FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTA_BOVIN (Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 72/189 (38.10%), Postives = 90/189 (47.62%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 ALVCDNGSGLCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT3_PODCA (Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  + + L
Sbjct:    8 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYMMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_NAEFO (Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 70/199 (35.18%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN 642
            ++A  VD GS + KAG A  D AP  V PS + R  +        +    V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETF++   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L ++   T  S N
Sbjct:    1 VQALEVDNGSGMCKAGFA-GDDAPGAVFPSIIGRPKQKSIMVGMGNKDAYVGDEVQSKRGILIFKYPIQHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLIEDSHGTCYSFN 197          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_PODCA (Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  + + L
Sbjct:    8 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYMMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ECHGR (Actin-1 OS=Echinococcus granulosus GN=ACTI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 68/187 (36.36%), Postives = 92/187 (49.20%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            VVD GS + KAG A  D +P  V PS + R  +        +  + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 VVDNGSGMCKAGFA-GDDSPRAVFPSLVGRPRQQSIMVGMGNKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVRAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDWLTKLL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT18_DICDI (Actin-18 OS=Dictyostelium discoideum GN=act18 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 71/216 (32.87%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSV--DNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYD--VEKLKEQFS 684
            +++A V+D GS + KAG A  D AP  V  S + R    G   V     + + D             P+ RG + +WD ME++ HH  Y  LG     E  +L T+   +PK  RE++ Q+MFETFN    Y + QAVLSLY+ GR +G  +D G G      + EG     A  R ++ G DL+  + + L K   S   +     ++ +KE+ S
Sbjct:    5 EVQAIVIDNGSDMCKAGFA-GDDAPRAVFQSIVGRPRYTGVMDVMGQKDSYIGDEAHSRKGFLTLKYPIERGIVTNWDDMEEIWHHTFYNELGVAP-EEHPVLLTEQPLNPKKNREKMTQIMFETFNTPAMYVAIQAVLSLYSSGRTTGIVMDSGDGVSHAVSIYEGHALPHAILRLDLAGRDLSDYMMKILTKRGYSFTTTAEKEIIKDIKEKLS 218          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_PHYME (Actin OS=Phytophthora megasperma PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 68/191 (35.60%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPS--QMKRVLEDGSSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++A V+D GS + KAG A  D AP  V PS   M + L            + D             P+  G + +WD ME +  H  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +GC +D G G     P+ EG     A  R ++ G DLT  + + L
Sbjct:    5 IQAVVIDNGSGMCKAGFA-GDDAPRAVFPSIVGMPKHLGIMVGMNQKDAYIGDEAQAKRGVLTLRYPIEHGIVTNWDDMEKIWSHTFYNELRVAP-EEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_ENTHI (Actin OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 70/192 (36.46%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--SSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++A VVD GS + KAG A  D AP  V PS + R       +        V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y   QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVQALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHVSVMAGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKANREKMTQIMFETFNTPAMYVGIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_CHOCR (Actin OS=Chondrus crispus GN=AC PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 74/211 (35.07%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS--LYDVEKLKEQ 678
            A V+D GS   K G A  D  P  V P+ + +  + G    +      V D  M          P+  G + +WD ME +  H  Y+ L  +   E  +L T+   +PKA RE++ Q+MFE+FNI  FY + QAVLSLYA GR SG  +D G G     P+ EG     A  R ++ G DLT  +A+ L +   S   S  L  V  +K+Q
Sbjct:    5 AVVIDNGSGRCKTGIAGED-CPKAVFPAVIGKPKQKGIMVGTGQKDEYVGDAAMARRGVLIIKYPLEHGIVTNWDDMEKIWSHAFYSELRVDP-QEHPVLLTEAPLNPKANRERMTQIMFESFNIPAFYVAIQAVLSLYASGRTSGIVLDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTGWMAKLLMQRGYSFTTSAELEIVRDVKQQ 213          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 71/189 (37.57%), Postives = 90/189 (47.62%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L+KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L         +L   PL +PKA RE++ Q+MFETFN+   Y + QAVL LYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    9 ALVCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL-NPKANREKMTQIMFETFNVPAMYVAIQAVLPLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 195          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACTA_BOVIN1.472e-2038.10Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2... [more]
ACT3_PODCA1.472e-2037.04Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1[more]
ACT2_NAEFO1.472e-2035.18Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1[more]
ACT1_PODCA1.472e-2037.04Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1[more]
ACT1_ECHGR1.472e-2036.36Actin-1 OS=Echinococcus granulosus GN=ACTI PE=3 SV... [more]
ACT18_DICDI1.472e-2032.87Actin-18 OS=Dictyostelium discoideum GN=act18 PE=3... [more]
ACT_PHYME1.922e-2035.60Actin OS=Phytophthora megasperma PE=3 SV=1[more]
ACT_ENTHI1.922e-2036.46Actin OS=Entamoeba histolytica PE=2 SV=1[more]
ACT_CHOCR1.922e-2035.07Actin OS=Chondrus crispus GN=AC PE=2 SV=1[more]
ACTS_ATRMM1.922e-2037.57Actin, alpha skeletal muscle OS=Atractaspis microl... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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