FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 69/191 (36.13%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDCLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 69/191 (36.13%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDCLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_ARTSX (Actin, clone 211 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 71/189 (37.57%), Postives = 90/189 (47.62%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAVLS+YA GR +G  +D G G     P+ EG     A  R ++ G DL   L + L
Sbjct:    8 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSIYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLIDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 71/211 (33.65%), Postives = 101/211 (47.87%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYD--VEKLKEQ 678
            A V D GS ++K+G +  D AP  V PS + R   + +   S +    V D             P+  G + +WD ME + HH  Y  L     +   +L T+   +PK  RE++ Q+MFETF +   Y   QAVLSLY+ GR +G  +D G G     P+ EG     A RR ++ G DLT+ L + L  T  +   S     V  +KEQ
Sbjct:    8 AIVCDNGSGMVKSGFS-GDDAPRHVFPSIVGRPKNEQAMMGSANKKLFVGDEAQAKRGVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPESHN-VLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQAVLSLYSSGRTTGIVLDAGDGVTHTVPIYEGYSLPHAIRRVDMAGRDLTEYLMKILMHTGMTFTTSAEKEIVRNIKEQ 216          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 69/192 (35.94%), Postives = 91/192 (47.40%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG A  D AP  V PS        G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK  RE++ Q+MFETFN   FY + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 EVAALVLDNGSGMCKAGFA-GDDAPRAVFPSICGGPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKVNREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLIKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTBL_HUMAN (Beta-actin-like protein 2 OS=Homo sapiens GN=ACTBL2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 69/193 (35.75%), Postives = 92/193 (47.67%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++ A VVD GS + KAG    D AP  V PS + R    G           V D             P+  G + +WD ME + +H  Y  L     +E  IL T+   +PK  RE++ Q+MFE FN    Y + QAVLSLYA GR +G  +D G G   I P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 NELSALVVDNGSGMCKAGFG-GDDAPRAVFPSMIGRPRHQGVMVGMGQKDCYVGDEAQSKRGVLTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAP-DEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHIVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT9_ARATH (Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 PE=5 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKR-----------VLEDGSSSVDNSTLVEDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQ 612
            M+  V D G  +++AG A  D+AP +V P  + R           V E+G ++ D  TL      DP+  G + +WD ME + H+  Y  L  +   E  +L T+   +PKA RE++ Q+MFE+F++   Y S Q+VL LY+ GR +G  +D+G       PV EG        R ++GG DLT  L +
Sbjct:    1 MKPIVCDKGHGMVQAGFA-GDEAPKVVFPCVVGRPRDGLNPNESYVGEEGHANRDILTL-----KDPMEHGIVNNWDDMEKIWHYTFYNELRVDP-EEHPVLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSSGRTTGVVLDLGERVSHTVPVYEGYALPHGILRLDLGGRDLTDYLIE 182          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT24_DICDI (Putative actin-24 OS=Dictyostelium discoideum GN=act24 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 71/187 (37.97%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG---------SSSVDNSTLVEDVT--MDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            V+D GS + KAG A  D AP  V PS + R    G         S   D +    D+     PV RG I +W+ ME++ HH  Y  L      E  +L T+P  + KA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     PV EG    ++  R  + G DLT  +++ L
Sbjct:   10 VIDNGSGMCKAGFAGYD-APHAVFPSIVGRPRHTGVMVGMGQKDSYIGDEAQSKRDILNLKFPVERGIITNWNDMEEIWHHTFYNELRVAP-EEHPVLLTEPPLNSKANREKMPQIMFETFNTPAMYVAIQAVLSLYASGRATGVILDSGDGVSYTVPVYEGNTFPLSITRLHLAGGDLTDYMSRLL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 69/191 (36.13%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKIL 195          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT3_ORYSJ3.279e-2036.13Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI3.279e-2036.13Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_ARTSX3.279e-2037.57Actin, clone 211 OS=Artemia sp. PE=2 SV=1[more]
ACT1_TRYBB3.279e-2033.65Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT_PUCGR4.282e-2035.94Actin OS=Puccinia graminis PE=3 SV=1[more]
ACTBL_HUMAN4.282e-2035.75Beta-actin-like protein 2 OS=Homo sapiens GN=ACTBL... [more]
ACT9_ARATH4.282e-2034.39Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 P... [more]
ACT24_DICDI4.282e-2037.97Putative actin-24 OS=Dictyostelium discoideum GN=a... [more]
ACT1_ARATH4.282e-2036.13Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]
ACT_GOSHI5.593e-2035.60Actin OS=Gossypium hirsutum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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