FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_LYTPI (Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 69/189 (36.51%), Postives = 92/189 (48.68%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS ++KAG A  D AP  V PS + R    G         S V      +   +    P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G D+T  L + L
Sbjct:    8 ALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGGQAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSYTVPIYEGYALPHAILRLDLAGRDITDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 70/201 (34.83%), Postives = 94/201 (46.77%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   S
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTS 205
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 70/201 (34.83%), Postives = 94/201 (46.77%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   S
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTS 205
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 70/201 (34.83%), Postives = 95/201 (47.26%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETF++   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   S
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTS 205
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 70/201 (34.83%), Postives = 95/201 (47.26%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETF++   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   S
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYSFTTS 205
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_LYTPI (Actin, cytoskeletal 2 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 69/191 (36.13%), Postives = 91/191 (47.64%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMDP---------VVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            + A V+D GS ++KAG A  D AP  V PS + R    G         + V D              +  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G   D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    6 VSALVIDNGSGMVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYLIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKIL 194
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 195
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 195
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1 
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 195
[Close]
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_STYPL (Actin, muscle OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 70/190 (36.84%), Postives = 90/190 (47.37%), Query Frame = 1 
Query:   85 AAVVDAGSKLLKAGPAIP-DQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V D GS L+KAG   P D  P  V P  + R    G         + V D             P+  G I +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   11 ALVCDNGSGLVKAG--FPGDAPPRAVFPLTVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDNMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 197
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT1_LYTPI5.593e-2036.51Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV... [more]
ACT11_SOLTU5.593e-2034.83Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT11_ARATH5.593e-2034.83Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT2_ORYSJ7.304e-2034.83Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI7.304e-2034.83Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT2_LYTPI7.304e-2036.13Actin, cytoskeletal 2 OS=Lytechinus pictus PE=2 SV... [more]
ACT1_SORBI7.304e-2035.60Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_ORYSJ7.304e-2035.60Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI7.304e-2035.60Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACTM_STYPL9.540e-2036.84Actin, muscle OS=Styela plicata PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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