FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTBM_HUMAN (Beta-actin-like protein 3 OS=Homo sapiens GN=ACTBL3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 69/187 (36.90%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            V+D GS + KAG A  D AP  V PS + R    G         S V      +   +    P+  G I +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAVLSLY  GR +G  +D G G     P+ EG     A+ R ++ G +LT  L + L
Sbjct:    9 VIDNGSGMCKAGFA-GDDAPQAVFPSIVGRPRHQGMMEGMHQKESYVGKEAQSKRGMLTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYTSGRTTGIVMDSGDGFTHTVPIYEGNALPHATLRLDLAGRELTDYLMKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    6 IQPIVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFTLPHAILRLDLAGRDLTDNLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    6 IQPIVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFTLPHAILRLDLAGRDLTDNLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT12_ARATH (Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 67/213 (31.46%), Postives = 109/213 (51.17%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLK---AGPAIPDQAPSMVIPSQMKR--VLEDGSSSVDNSTLV----EDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYD-VEKLKEQF 681
            +KM   V+D G+ + K   AG   P      ++  Q KR   +E     +          E   M PV  G + DW+A E +  H+L   L  +   +  +LFTDP  +P + RE+LV++ FE+ +    Y + Q+VLS+YA GR++G  VD GHG     PV +G       +R ++ G  LTK LA+++ +++ +V     D +E +K+Q+
Sbjct:   42 TKMSGVVIDMGTGICKMGFAGQTRPTYIVRNIVGCQPKRRTTMEQPKMEMFIGEAAHARPELTLMHPVRNGIVVDWEAAEFIWRHILENDLRLDT-QDHPLLFTDPPFNPASNREKLVEVAFESLHSPAIYVASQSVLSVYANGRVNGLVVDTGHGVSYTVPVFQGYNLPSGIQRMDLAGHYLTKFLAEKILRSSFAVKKEDMDTMENIKQQY 253          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 69/191 (36.13%), Postives = 92/191 (48.17%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNS--TLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G     N     V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPIVCDNGTGMVKAGFA-GDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT6_DIPDE (Actin-6 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT6 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 67/192 (34.90%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++  VVD GS + KAG A  D +P  V PS + R  +        +  + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++  +MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    2 EVQPLVVDNGSGMCKAGFA-GDDSPRAVFPSIVGRPRQQSIMVGMGNKDSYVGDEAQSKRGILSLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTSIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 191          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 67/187 (35.83%), Postives = 90/187 (48.13%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQ 612
            A V D G+ ++KAG A  D AP  V PS + R    G      +  T V D             P+  G + +WD ME + HH  Y  L  E   E  IL T+   +PK  RE++ Q+MFE+F     Y   QAVLSLY+ GR +G  +D G G     P+ EG     A  R ++ G DLT+ L +
Sbjct:   10 AIVCDNGTGMVKAGFA-GDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEP-EEHPILLTEAPLNPKVNREKMTQIMFESFAFPSMYIGIQAVLSLYSSGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLTK 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 69/191 (36.13%), Postives = 92/191 (48.17%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNS--TLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G     N     V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPIVCDNGTGMVKAGFA-GDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKIL 195          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACTBM_HUMAN9.540e-2036.90Beta-actin-like protein 3 OS=Homo sapiens GN=ACTBL... [more]
ACT7_ORYSJ9.540e-2035.60Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI9.540e-2035.60Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT4_ARATH9.540e-2035.60Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT12_ARATH9.540e-2035.60Actin-12 OS=Arabidopsis thaliana GN=ACT12 PE=1 SV=... [more]
ACTL9_RAT1.246e-1931.46Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]
ACT8_ARATH1.246e-1936.13Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]
ACT6_DIPDE1.246e-1934.90Actin-6 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACT5_ARATH1.246e-1935.83Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACT2_ARATH1.246e-1936.13Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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