FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 68/191 (35.60%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA +E++ Q+MFETFN+   Y + QAVLSLYA GR +GC +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   26 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANKERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAINRLDLAGRDLTDNLMKVL 149          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTX_TAKRU (Actin, alpha anomalous OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 70/191 (36.65%), Postives = 91/191 (47.64%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPS---------QMKRVLEDGSSSVDNSTLVEDVTM--DPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            A V D GS L+KAG A  D  P  V  +          M  + + G    D +    D+     P+ RG I +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+M ETFN+   Y S QAVLSLYA GR +G  +D G G     P+ EG     A  R  + G DLT  L + L +
Sbjct:    8 ALVCDNGSGLVKAGFA-GDDTPRAVFHAIVGRPRHQDDMDDMGKKGYYVGDEAQSKRDILSLKHPIERGIITNWDDMEKIWHHTFYNEL-CVAPEEHPTLLTEAPLNPKANREKMTQIMLETFNMPAMYVSIQAVLSLYASGRTTGIVLDSGEGVTHAVPIAEGYALPPAIMRLNLAGRDLTDYLMKILNE 196          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTL9_BOVIN (Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLK---AGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN------STLVEDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQE-LGKTNPSVNLSLYDVEKLKEQF 681
            K  A V+D G+   K   AG A P    + ++  Q ++    G   ++           E   + PV  G + DWDA E +  H+L   L      +  +LF+DP  SP   RE+LV++ FE+ +    Y + Q+VLS+YA GR+SG  VD GHG     PV +G     A++R ++ G  LT  LA+  LG   P     L  VE +K ++
Sbjct:   48 KTGAVVIDMGTGTCKVGFAGQARPTYTVATIVGCQPQKPATSGQPVMETFIGEAARKRPELTLVQPVHSGIVVDWDAAELIWRHMLEHDLRVAT-RDHPLLFSDPPFSPSTNREKLVEVAFESLSSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLPHATQRLDLAGTHLTAFLAEMLLGSGLPLGQQDLDTVENIKHRY 258          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 66/184 (35.87%), Postives = 88/184 (47.83%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLT 597
            ++  V D G+ ++KAG A  D AP  V PS + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT27_DICDI (Putative actin-27 OS=Dictyostelium discoideum GN=act27 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 70/208 (33.65%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLT---KLLAQELGKTNPSVNLSLYDVEKLKEQFS 684
            ++A V+D GS   KAG  + ++AP    PS +   ++   S V N    +   +    P+ RG I +WD ME + HH  Y  LG        +L   PL +P+  RE++ Q+MFETF     Y   QAV S+Y  GR++G  +D G     + PV EG     A+      G DLT    LL  +LG      NL    V  +KE+ S
Sbjct:    5 VQAIVIDNGSDTCKAG-FVGEEAPHSEFPSIVG--IDQNDSYVGNEAQSKRGILTLKYPIERGIITNWDDMEKIWHHAFYNELGVAPEENIVVLSESPL-NPEENREKMAQIMFETFKTPAIYVENQAVFSIYNSGRMTGIVLDSGDSASHVVPVYEGLALPHATSSLGFAGCDLTDQMSLLLNDLG-----YNLEREIVRDIKEKLS 203          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: POTEF_HUMAN (POTE ankyrin domain family member F OS=Homo sapiens GN=POTEF PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 67/187 (35.83%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            V+D GS + KAG A  D AP  V PS + R  + G         S V      +   +    P+  G I +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLY  GR +G  +D G G     P+ EG     A+ R ++ G +L   L + L
Sbjct:  709 VIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEAQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEATLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLRLDLAGRELPDYLMKIL 893          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTBL_MOUSE (Beta-actin-like protein 2 OS=Mus musculus GN=Actbl2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 68/192 (35.42%), Postives = 90/192 (46.88%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG    D AP  V PS + R    G           V D             P+  G + +WD ME + +H  Y  L     +E  IL T+   +PK  RE++ Q+MFE FN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 ELTALVVDNGSGMCKAGFG-GDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSKRGILTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAP-DEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT17_DICDI (Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 76/215 (35.35%), Postives = 106/215 (49.30%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPS----QMKRVLEDGSSSVDNSTLVEDVTMD-------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL-GKTNPSVNLSLYD-VEKLKEQFS 684
            ++A V+D GS + KAG A  D AP  V PS    Q  R +  G    D+    E  +         P+ RG I +WD ME + HH  Y  L      E  I  T    S KA RE++ Q+MFETF+    Y S Q+ LSLYA G  +G  +D G G     P++EG   + A  R ++ G DLT  L + L G+  P +++   + V  +KE+ S
Sbjct:    6 VQALVIDNGSSISKAGFA-GDDAPRAVFPSIVGRQRYRDVMVGMGQKDSYVGDEAQSKRGILNLKYPIERGIITNWDDMEKIWHHTFYNELRVAP-EEHPIHLTLSPSSSKANREKMTQIMFETFSNPAMYISIQSALSLYASGLTTGIVIDSGDGVSHTVPILEGHSINHAISRLDLAGNDLTDYLGKLLSGRGYPFISIDETEIVRDIKEKLS 218          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTL9_HUMAN (Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 69/212 (32.55%), Postives = 101/212 (47.64%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLK---AGPAIPDQAPSMVIPSQMKRVLEDGSSSVDN------STLVEDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTN-PSVNLSLYDVEKLKEQF 681
            K    V+D G+   K   AG A P    + ++  Q K+    G S +          L E   + P+  G + DWDA E +  H+L   L     ++  +LF+DP  SP   RE+LV++ FE+      Y + Q+VLS+YA GR+SG  VD GHG     PV +G     A+ R ++ G  LT  LA+ L +   P     L  VE +K  +
Sbjct:   48 KTGVVVIDMGTGTCKVGFAGQASPTYTVATILGCQPKKPATSGQSGLQTFIGEAARVLPELTLVQPLRSGIVVDWDAAELIWRHLLEHDLRVAT-HDHPLLFSDPPFSPATNREKLVEVAFESLRSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLLHATERLDLAGNHLTAFLAEMLLQAGLPLGQQDLDLVENIKHHY 258          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT1_TOBAC1.246e-1935.60Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT_COSCS1.627e-1940.80Actin (Fragment) OS=Costaria costata PE=3 SV=2[more]
ACTX_TAKRU1.627e-1936.65Actin, alpha anomalous OS=Takifugu rubripes PE=2 S... [more]
ACTL9_BOVIN1.627e-1932.55Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 S... [more]
ACT3_PEA1.627e-1935.87Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT27_DICDI1.627e-1933.65Putative actin-27 OS=Dictyostelium discoideum GN=a... [more]
POTEF_HUMAN2.125e-1935.83POTE ankyrin domain family member F OS=Homo sapien... [more]
ACTBL_MOUSE2.776e-1935.42Beta-actin-like protein 2 OS=Mus musculus GN=Actbl... [more]
ACT17_DICDI2.776e-1935.35Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3... [more]
ACTL9_HUMAN3.625e-1932.55Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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