FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_TRYBB (Actin B OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 69/213 (32.39%), Postives = 101/213 (47.42%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQA----PSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYD--VEKLKEQ 678
            A V D GS ++K+G +  D      PS+V P + ++ +     S      V D             P+  G + +WD ME + HH  Y  L     +   +L T+   +PK  RE++ Q+MFETF +   Y   QAVLSLY+ GR +G  +D G G     P+ EG     A RR ++ G DLT+ L + L +T  +   S     V  +KEQ
Sbjct:    8 AIVCDNGSGMVKSGFSGDDAPRHLFPSIVGPPKNEQAM---MGSAKQEMFVGDEAQAKRGVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPESHN-VLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQAVLSLYSSGRTTGIVLDAGDGVTHTVPIYEGYSLPHAIRRVDMAGRDLTEYLMKILMETGMTFTTSAQKEIVRNIKEQ 216          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 69/214 (32.24%), Postives = 101/214 (47.20%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYD--VEKLKEQ 678
            +  A V D GS ++KAG +  D A   V PS + R   + +   S      V D             P+  G + +WD ME + HH  Y  +     +   +L T+   +PK  RE++ Q+MFETF +   Y   QAVLSLY+ GR +G  +D G G     P+ EG     A RR ++ G DLT+ L + L ++  +   S     V  +KEQ
Sbjct:    5 EQSAIVCDNGSGMVKAGFS-GDDALCHVFPSIVGRPKNEQAMMGSASKKLFVGDEAQAKRGVLSLKYPIEHGIVTNWDDMEKIWHHTFYNDVRVNPESHS-VLLTEAPMNPKQNREKMTQIMFETFGVPAMYVGIQAVLSLYSSGRTTGIVLDAGDGVTHTVPIYEGYSLPHAIRRMDMAGRDLTEYLMKLLMESGMTFTTSAEKEIVRNVKEQ 216          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_STRPU (Actin, muscle OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 68/189 (35.98%), Postives = 88/189 (46.56%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A VVD GS + K G A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + +AVLSLYA GR +G     G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVVDNGSGMCKTGFA-GDDAPRAVFPSIVGRPRHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIKAVLSLYASGRTTGIXXXXGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_BRAFL (Actin, muscle OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 68/183 (37.16%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 606
            V D GS L+KAG A  D AP  V PS + R    G           V D             PV  G + +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MFETFN    Y   QAVL LYA GR +G  +D G G     P+ EG     A  R ++ G +LT  L
Sbjct:   12 VCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDMEKVWHHTFYNELRIAP-EENPCLLTEAPLNPKANREKMTQIMFETFNSPAMYVCIQAVLCLYASGRTTGIVLDSGDGVSHTVPIYEGYAMPHAILRLDLAGRELTNYL 192          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_BRABE (Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 68/183 (37.16%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 606
            V D GS L+KAG A  D AP  V PS + R    G           V D             PV  G + +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MFETFN    Y   QAVL LYA GR +G  +D G G     P+ EG     A  R ++ G +LT  L
Sbjct:   13 VCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDMEKVWHHTFYNELRIAP-EENPCLLTEAPLNPKANREKMTQIMFETFNSPAMYVCIQAVLCLYASGRTTGIVLDSGDGVSHTVPIYEGYAMPHAILRLDLAGRELTNYL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 67/191 (35.08%), Postives = 90/191 (47.12%), Query Frame = 1
Query:   79 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++  V D G+ ++KAG A  D AP  V P  + R    G           V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    7 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPRIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   82 EAAVVDAGSKLLKAGPAIPDQA----PSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            EA VVD GS ++KAG A  +Q     PS+V   + K+V+  G+ + D    V D             P+  G I+DWD M+ +  +  Y  L  E  N   +L   PL +PK  RE + ++MFE ++    Y   QAVLSLY+ GR +G  VD G G   + P+ EG     A  +  + G DLT  + + L
Sbjct:    9 EAIVVDNGSGVVKAGFAGENQPCSVFPSVVAKPKTKQVIVGGAGNKD--CFVGDERQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTFYNELRIETENHPVLLTEAPL-NPKQNRENMCRIMFEEYDFPSMYIQIQAVLSLYSAGRTTGIVVDSGDGVTHVVPIFEGYQIPHAIEKILLAGRDLTDYMCRIL 197          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_ACECL (Actin (Fragment) OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PK+ RE+L Q+MFETFN+   Y S QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKSNREKLTQIMFETFNVPAMYVSIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLTKLL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTM_BRALA (Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 68/183 (37.16%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 606
            V D GS L+KAG A  D AP  V PS + R    G           V D             PV  G + +WD ME + HH  Y  L      E   L T+   +PKA RE++ Q+MFETFN    Y   QAVL LYA GR +G  +D G G     P+ EG     A  R ++ G +LT  L
Sbjct:   14 VCDNGSGLVKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPVEHGIVTNWDDMEKIWHHTFYNELRIAP-EENPCLLTEAPLNPKANREKMTQIMFETFNSPAMYVCIQAVLCLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTNYL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 648
            P+  G + +WD ME + HH  Y  L     +E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   S
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVSP-DEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDCLMKILTERGYSFTTS 185          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT2_TRYBB3.625e-1932.39Actin B OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT_TRYCR4.734e-1932.24Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACTM_STRPU4.734e-1935.98Actin, muscle OS=Strongylocentrotus purpuratus PE=... [more]
ACTM_BRAFL4.734e-1937.16Actin, muscle OS=Branchiostoma floridae PE=2 SV=1[more]
ACTM_BRABE4.734e-1937.16Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1[more]
ACT3_SOLTU4.734e-1935.08Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT_EUPCR6.183e-1934.38Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]
ACT_ACECL6.183e-1941.60Actin (Fragment) OS=Acetabularia cliftonii PE=3 SV... [more]
ACTM_BRALA6.183e-1937.16Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV... [more]
ACT12_SOLTU6.183e-1939.26Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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