FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSJ (Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 65/208 (31.25%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVT----------MD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKE 675
            V D G+  +K G A  +  P+ V P  + R L     S+    L + V           +D   PV  G ++ WD M  +  H  Y+ L  +  +E +IL TDP  +P   RE++++ MFE +N +G +   QAVLSLYA G ++G  +D G G   + PV++G      ++R  V G  +T  L   L +   ++N S  D E ++E
Sbjct:    8 VCDNGTGYVKCGFA-GENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDP-SECKILLTDPPLNPVKNREKMIETMFEKYNFAGVFIQVQAVLSLYAQGLLTGLVIDSGDGVTHVVPVVDGFSYPHITKRMNVAGRHITSYLVDLLSRRGYAMNKSA-DFETVRE 212          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSI (Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 65/208 (31.25%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVT----------MD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKE 675
            V D G+  +K G A  +  P+ V P  + R L     S+    L + V           +D   PV  G ++ WD M  +  H  Y+ L  +  +E +IL TDP  +P   RE++++ MFE +N +G +   QAVLSLYA G ++G  +D G G   + PV++G      ++R  V G  +T  L   L +   ++N S  D E ++E
Sbjct:    8 VCDNGTGYVKCGFA-GENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDP-SECKILLTDPPLNPVKNREKMIETMFEKYNFAGVFIQVQAVLSLYAQGLLTGLVIDSGDGVTHVVPVVDGFSYPHITKRMNVAGRHITSYLVDLLSRRGYAMNKSA-DFETVRE 212          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP2_CAEEL (Actin-related protein 2 OS=Caenorhabditis elegans GN=arx-2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 64/211 (30.33%), Postives = 104/211 (49.29%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMD-------------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS--LYDVEKLKEQ 678
            VVD G+  +K G A     P+ + PS + R +   +  V N  + + +  +             P+  G +R+WD M  +  H         +  E ++L T+P  +P + RE++ Q+MFE +  +  Y + QAVL+LYA G ++G  VD G G   I PV EG   H  +RR ++ G D+TK L + L +   + N S     V ++KE+
Sbjct:   10 VVDNGTGFVKCGYA-GTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAGRDITKYLIKLLLQRGYNFNHSADFETVRQMKEK 219          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 63/215 (29.30%), Postives = 110/215 (51.16%), Query Frame = 1
Query:   70 VSKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNS--TLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPS-VNLSLYDVEKLKEQ 678
            V K++A ++D GS+  K G A  +  P+  I S + +   + + + D    TLV    ++         P+  G + DWD ++D+  ++    +      E  +L +DP  SP + RE+  +LMFETF I   + + Q++LS+Y+ G+ SG  V+ GHG   + P+ EG V    + R +  G DLT  L Q L +   +  +  L+ +E +K++
Sbjct:   46 VHKIKAVIIDLGSQYCKCGYA-GEPRPTYFISSTVGKRCPEAADAGDTRKWTLVGHELLNTEAPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILP-EEHAVLVSDPPLSPSSNREKYAELMFETFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYLMQLLNEAGHAFTDDHLHIIEHIKKK 258          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTD_PHYPO (Actin, spherule isoform OS=Physarum polycephalum GN=ARDD PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 70/214 (32.71%), Postives = 100/214 (46.73%), Query Frame = 1
Query:   82 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQM--KRVLEDGSSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS--LYDVEKLKEQFS 684
            EA V+D GS + KAG A  D  P  + PS +   R  E         + V D             P+ +G + +WD ME + HH  Y  +      E  +L T+   +PKA RE++ Q+MFE+F+    Y + QAVLSL A GR +G  +D G G     P+ EG     A  R +  G DLT  L   L +   + N +  L  V  +KE+ +
Sbjct:    4 EAVVIDNGSGMCKAGFA-GDNTPRAMFPSIVGHPRHTEAMMEIGHKHSYVGDEAQSKRGILALKYPIEQGIVNNWDDMEQIWHHTFYNEMRVAP-EEHPVLLTEAPLNPKANREKMTQIMFESFSAPAMYVAIQAVLSLRASGRTTGIVLDSGDGASHAVPIYEGCALPHAILRIDAAGRDLTHYLRLMLAERGYAFNTTAELEIVRDIKEKLA 215          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT+ L + L
Sbjct:   71 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTESLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_TETTH (Actin, macronuclear OS=Tetrahymena thermophila PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV--------LEDGSSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTK 600
            S+  A V+D GS + KAG A  D AP    PS + R         ++     V      +   ++   P+  G + D+D ME + HH  Y  L      E   L T+   +PK  RE++ + MFETFN+  FY + QAVLSLYA GR +G  VD G G     P+ EG     A  R ++ G +LT+
Sbjct:    4 SESPAIVIDNGSGMCKAGIA-GDDAPRAAFPSIVGRPKMPGIMVGMDQKECYVGEEAQAKRGVLNLKYPIEHGIVTDYDDMEKIWHHCFYNELRVTP-EEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYVAIQAVLSLYASGRTTGIVVDSGDGVTHTVPIYEGYALPHAILRIDLAGRELTE 188          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: POTEE_HUMAN (POTE ankyrin domain family member E OS=Homo sapiens GN=POTEE PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 67/187 (35.83%), Postives = 90/187 (48.13%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDG--------SSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            V+D GS + KAG A  D AP  V PS + R  + G         S V      +   +    P+  G I +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAV SLY  GR +G  +D G G     P+ EG     A+ R ++ G +L   L + L
Sbjct:  709 VIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEAQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVPSLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLRLDLAGRELPDYLMKIL 893          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTZ_PNECA (Actin-2 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 61/189 (32.28%), Postives = 94/189 (49.74%), Query Frame = 1
Query:   94 VDAGSKLLKAGPAIPDQAPSMVIPSQMKRV--LEDGSSSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKT 627
            +D GS ++KAG A  DQ P    PS + R   L+  + +++    + +   +         P+  G + DWD ME +   +    L      E  +L T+   +P+  R+Q  Q+ FETFN+   ++S QAVLSLYA GR +G  +D G G     P+ EG     A RR ++ G D+T+ L   L K+
Sbjct:   14 IDNGSGVIKAGFAGEDQ-PKSFFPSYVGRPKHLKIMAGAIEGDIFIGNKAQELRGLLKIKYPIEHGIVVDWDDMERIWQFIYTEELK-TVSEEHPVLLTEAPLNPRTNRDQAAQVFFETFNVPALFTSIQAVLSLYASGRTTGVVLDSGDGVTHAVPIYEGFAMPSAIRRIDIAGRDVTEYLQLLLRKS 200          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAH-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKIL 175          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ARP2_ORYSJ8.076e-1931.25Actin-related protein 2 OS=Oryza sativa subsp. jap... [more]
ARP2_ORYSI8.076e-1931.25Actin-related protein 2 OS=Oryza sativa subsp. ind... [more]
ARP2_CAEEL8.076e-1930.33Actin-related protein 2 OS=Caenorhabditis elegans ... [more]
ACL7B_HUMAN8.076e-1929.30Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
ACTD_PHYPO1.055e-1832.71Actin, spherule isoform OS=Physarum polycephalum G... [more]
ACT1_PEA1.055e-1840.80Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT1_TETTH1.378e-1834.76Actin, macronuclear OS=Tetrahymena thermophila PE=... [more]
POTEE_HUMAN1.799e-1835.83POTE ankyrin domain family member E OS=Homo sapien... [more]
ACTZ_PNECA1.799e-1832.28Actin-2 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT6_TOBAC1.799e-1840.80Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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