FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT23_DICDI (Putative actin-23 OS=Dictyostelium discoideum GN=act23 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 65/180 (36.11%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  112 LLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    1 MCKAGFA-GDDAPCTVFPSIVGRPRHTGVMVGMCQKGSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 178          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT4_SOLLC (Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 606
            P+  G + +WD ME + HH  Y  L     ++  IL T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L
Sbjct:   52 PIRHGIVDNWDDMEKIWHHTFYNELRVAPEDDS-ILLTEAPLNPKANREKMTQIMFETFNVPAMYIAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 171          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_SOLTU (Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT+ + + L
Sbjct:   52 PIEHGIVNNWDDMEKIWHHTFYNELRVAP-EERPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGADLTEYMVKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP2_YEAST (Actin-related protein 2 OS=Saccharomyces cerevisiae GN=ARP2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 63/212 (29.72%), Postives = 101/212 (47.64%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMD--------------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN--LSLYDVEKLKEQ 678
            V+D G+  +K G A  +  P    PS + R +         +T ++D+ +               P+  G I++W  ME L  +  +  +     + G+IL T+P  +P   RE++ ++MFE ++  G Y + QAVL+LYA G  SG  VD G G   I PV E  V    +RR +V G D+T+ L   L +   + N       V ++KE+
Sbjct:    8 VLDQGTGFVKIGRA-GENFPDYTFPSIVGRPILRAEERASVATPLKDIMIGDEASEVRSYLQISYPMENGIIKNWTDMELLWDYAFFEQMKLPSTSNGKILLTEPPMNPLKNREKMCEVMFEKYDFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLSHLTRRLDVAGRDVTRHLIDLLSRRGYAFNRTADFETVRQIKEK 218          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_PICGU (Actin OS=Pichia guilliermondii GN=ACT1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 62/182 (34.07%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  112 LLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            + KAG A  D AP  V PS + R    G         + V D             P+  G +++WD ME + HH  Y  L      E  +L T+   +PK  RE++ Q+MFETFN+  FY + QAVLSLY+ GR +G  +D G G   + P+  G        R ++ G DLT  L + L +
Sbjct:    1 MCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQRDSYVGDEAQSKRGILTLRYPIEHGIVKNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKLNREKMTQIMFETFNVPAFYVNIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHGILRLDLAGRDLTDYLMKILSE 180          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTZ_NEUCR (Actin-like protein OS=Neurospora crassa GN=ro-4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 64/191 (33.51%), Postives = 94/191 (49.21%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV--LEDGSSSVDNSTLVEDVTMD----------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKT 627
            V+D GS  ++AG A  D  P    PS + R   L   + +++    +                P+  G + DWD ME +  +V   GL      E  +L T+P  +P+A R+   Q++FETFN+   Y+S QAVLSLYA GR +G  +D G G     PV +G     + RR +V G D+T+ L   L K+
Sbjct:   11 VLDNGSGTIRAGFA-GDDVPKCHFPSFVGRPKHLRVLAGALEGEVFIGQKAASELRGLLKIRYPLEHGIVTDWDDMEKIWAYVYDEGLK-TLSEEHPVLLTEPPLNPRANRDTAAQILFETFNVPALYTSIQAVLSLYASGRTTGVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEYLQTLLRKS 199          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT3_ECHGR (Actin-3 (Fragment) OS=Echinococcus granulosus GN=ACTIII PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    4 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 127          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_PLAYO (Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPS-----QMKRVL---EDGSSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLT 597
            A VVD GS ++K+G A  D AP  V PS     +M  ++   E     V +    +   +    P+  G + +WD ME +  H  +  L      E  +L T+   +PK  RE++ Q+MFE+F++   Y S QA+LSLYA GR +G  +D G G     P+ EG V   A  R ++ G DLT
Sbjct:    7 ALVVDNGSGMVKSGLA-GDDAPKCVFPSIIGIPKMPNIMVGMEQKECYVGDEAQNKRGILTLKYPIEHGIVTNWDDMEKIWRHTFFNELRVSP-EEHPVLLTEAPLNPKTNREKMTQIMFESFDVPAMYVSIQAILSLYASGRTTGIVLDSGDGVTHTVPIYEGYVLPHAINRTDMAGRDLT 186          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_PLABA (Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB001050.02.0 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPS-----QMKRVL---EDGSSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLT 597
            A VVD GS ++K+G A  D AP  V PS     +M  ++   E     V +    +   +    P+  G + +WD ME +  H  +  L      E  +L T+   +PK  RE++ Q+MFE+F++   Y S QA+LSLYA GR +G  +D G G     P+ EG V   A  R ++ G DLT
Sbjct:    7 ALVVDNGSGMVKSGLA-GDDAPKCVFPSIIGIPKMPNIMVGMEQKECYVGDEAQNKRGILTLKYPIEHGIVTNWDDMEKIWRHTFFNELRVSP-EEHPVLLTEAPLNPKTNREKMTQIMFESFDVPAMYVSIQAILSLYASGRTTGIVLDSGDGVTHTVPIYEGYVLPHAINRTDMAGRDLT 186          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT23_DICDI1.799e-1836.11Putative actin-23 OS=Dictyostelium discoideum GN=a... [more]
ACT4_SOLLC2.350e-1841.32Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 ... [more]
ACT2_SOLTU2.350e-1840.00Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT2_SOLLC2.350e-1840.80Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ARP2_YEAST3.069e-1829.72Actin-related protein 2 OS=Saccharomyces cerevisia... [more]
ACT_PICGU3.069e-1834.07Actin OS=Pichia guilliermondii GN=ACT1 PE=3 SV=1[more]
ACTZ_NEUCR3.069e-1833.51Actin-like protein OS=Neurospora crassa GN=ro-4 PE... [more]
ACT3_ECHGR3.069e-1840.80Actin-3 (Fragment) OS=Echinococcus granulosus GN=A... [more]
ACT2_PLAYO3.069e-1834.62Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=... [more]
ACT2_PLABA3.069e-1834.62Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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