FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT8_SOLTU (Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT2_TETPY (Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 65/187 (34.76%), Postives = 89/187 (47.59%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV--------LEDGSSSVDNSTLVEDVTMD---PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTK 600
            S   A V+D GS + KAG A  D AP    PS + R         ++     V      +   ++   P+  G + D+D ME + HH  Y  L      E   L T+   +PK  RE++ + MFETFN+  FY + QAVLSLYA GR +G  VD G G      + EG     A  R ++ G DLT+
Sbjct:    4 SDSPAIVIDNGSGMCKAGIA-GDDAPRAAFPSIIGRPKMPGIMVGMDQKECYVGEEAQAKRGVLNLKYPIEHGIVTDYDDMEKIWHHCFYNELRVTP-EEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYVAIQAVLSLYASGRTTGIVVDSGDGVTHTVSIYEGYALPHAILRIDLAGRDLTE 188          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_SOLTU (Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT10_SOLTU (Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ARP2_DICDI (Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 60/190 (31.58%), Postives = 99/190 (52.11%), Query Frame = 1
Query:   91 VVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMD-------------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG-AVQHIASRRFEVGGMDLTKLLAQEL 618
            V+D G+  +K G A  +  P+ + PS + R +      V+N  + + +  D             P+  G IR+WD +  +  + L   L   +  E +IL T+P  +P A R+++++ MFE +     Y + QAVL+LYA G ++G  VD G G   I PV EG ++ H+ +RR +V G D+T+ L + L
Sbjct:    8 VMDNGTGFVKCGFAGAN-FPTAIFPSMVGRPILRSEEKVENVEIKDIMVGDEAAKLRSMLQITYPLENGIIRNWDDITHVWDYALKEKLKVSDPTECKILLTEPPMNPVANRQKMIECMFEKYGFQAVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIIPVYEGYSIPHL-TRRLDVAGRDVTRYLIKLL 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+ RG I  W+ ME L  H+    LG  + N+  +L T+P  +P+  RE++ ++MFE+FN+  FY S+QAVL+LYA   ++G  VD G G     P+ EG     A  +  V G D+T+ L + L
Sbjct:   74 PIERGLITGWEDMEKLWKHLFEWELG-VKANDQPVLMTEPSLNPRETREKMAEVMFESFNVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLL 197          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT7_TOBAC (Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  244 PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G  LT  L + L
Sbjct:   52 PIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRGLTDYLMKIL 175          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_SPOLI (Actin (Fragment) OS=Spodoptera littoralis PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 62/161 (38.51%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   94 VDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEG 543
            VD GS + KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG
Sbjct:    1 VDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 159          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTT2_MACFA (Actin-related protein T2 OS=Macaca fascicularis GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 64/193 (33.16%), Postives = 93/193 (48.19%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPA---------------IPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTMDPVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A + D GS L KAG +               +  QAPS     +   V E+    ++   L       P+ RG I  WD ME L  H+    LG +  ++  +L T+P  +P+  RE++ ++MFE F +  FY S+QAVL+LYA   ++G  VD G G     P+ EG     A  +  V G D+T+LL Q L
Sbjct:   11 AVIFDNGSGLCKAGLSGEFGPRHIVSSIVGHLKFQAPSAGANQKKYFVGEEALYKLEALQL-----HSPIERGLITGWDDMERLWKHLFEWELGVKPSDQ-PLLATEPSLNPRENREKMAEVMFENFGVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLHVAGRDITELLTQLL 197          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT8_SOLTU6.836e-1840.80Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT5_SOLTU6.836e-1840.80Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT2_TETPY6.836e-1834.76Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 ... [more]
ACT1_SOLTU6.836e-1840.80Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT10_SOLTU6.836e-1840.80Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C... [more]
ARP2_DICDI8.929e-1831.58Actin-related protein 2 OS=Dictyostelium discoideu... [more]
ACTT2_BOVIN8.929e-1838.40Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ACT7_TOBAC8.929e-1840.00Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT_SPOLI1.166e-1738.51Actin (Fragment) OS=Spodoptera littoralis PE=2 SV=... [more]
ACTT2_MACFA1.166e-1733.16Actin-related protein T2 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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