FC868968

Overview
NameFC868968
Unique NameFC868968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 69/189 (36.51%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  + + L
Sbjct:    8 ALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_SACKO (Actin-1 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 70/192 (36.46%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  + PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVVDNGSGMCKAGFA-GDDAPRAIFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDTGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_PLABA (Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB000323.01.0 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 67/192 (34.90%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            +++A V+D GS  +KAG A  D AP  V PS + R    G      +    V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK  RE++ Q+MFE+FN+   Y + QAVLSLY+ GR +G  +D G G     P+ EG     A  R ++ G DLT+ L + L
Sbjct:    5 EVQALVIDNGSGNVKAGVA-GDDAPRSVFPSIVGRPKNPGIMVGMEEKDAFVGDEAQTKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL--RAAPEHPVLLTEAPLNPKGNRERMTQIMFESFNVPAMYVAIQAVLSLYSSGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTEYLMKIL 193          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ONCVO (Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 71/192 (36.98%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_CAEEL (Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 71/192 (36.98%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT1_ARTSX (Actin, clone 205 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 73/192 (38.02%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G I +WD ME + HH  Y  L      E  IL T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGVVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_LUMRU (Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 71/192 (36.98%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    1 EVTALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 190          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_KLULA (Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 68/195 (34.87%), Postives = 96/195 (49.23%), Query Frame = 1
Query:   73 SKMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 624
            S++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PK  RE++ Q++FETFN+  FY S QAVLSLY+ GR +G  +D G G   + P+  G     A  R ++ G D+T  L + L +
Sbjct:    3 SEVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPMNPKNNREKMTQILFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDITDYLMKILAE 195          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACT_BRUMA (Actin OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 70/192 (36.46%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   76 KMEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            ++ A V+D GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    5 EVAALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDTGDGVTHSVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 194          
BLAST of FC868968 vs. ExPASy Swiss-Prot
Match: ACTY_LIMPO (Actin-11 OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 71/189 (37.57%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   85 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGS--SSVDNSTLVEDVTMD---------PVVRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 618
            A VVD GS + KAG A  D AP  V PS + R    G         + V D             P+  G + +WD ME + HH  Y  L      E  +L T+   +PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G DLT  L + L
Sbjct:    8 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKVL 194          
The following BLAST results are available for this feature:
BLAST of FC868968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ACT1_SCHMA2.965e-2136.51Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT1_SACKO2.965e-2136.46Actin-1 OS=Saccoglossus kowalevskii PE=2 SV=1[more]
ACT1_PLABA2.965e-2134.90Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]
ACT1_ONCVO2.965e-2136.98Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1[more]
ACT1_CAEEL2.965e-2136.98Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 ... [more]
ACT1_ARTSX2.965e-2138.02Actin, clone 205 OS=Artemia sp. PE=2 SV=1[more]
ACT_LUMRU3.873e-2136.98Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1[more]
ACT_KLULA3.873e-2134.87Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2[more]
ACT_BRUMA3.873e-2136.46Actin OS=Brugia malayi PE=1 SV=1[more]
ACTY_LIMPO3.873e-2137.57Actin-11 OS=Limulus polyphemus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31007B03EF AbioticL1 Citrus clementina cDNA clone C31007B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868968 ID=FC868968; Name=FC868968; organism=Citrus clementina; type=EST; length=684bp
TATTATCATAGATTCTTAGATACTCTGTGAAGGGTTTTGACAAATTTTGG
TGATTACTGAGCTCTGCCCGTCAGCAAAATGGAGGCTGCTGTGGTGGATG
CTGGCTCGAAGCTTCTCAAAGCGGGACCCGCCATCCCAGACCAAGCTCCC
TCCATGGTGATTCCTAGCCAAATGAAGCGTGTGCTTGAAGATGGGTCATC
TTCTGTTGATAATTCAACTTTAGTAGAGGATGTGACTATGGATCCTGTTG
TGAGAGGCTTTATTAGAGACTGGGATGCCATGGAGGATTTGTTGCATCAT
GTTCTGTACGCTGGGCTTGGATGGGAAGAGGGTAATGAAGGGCAGATATT
GTTCACGGATCCACTTTGCTCTCCCAAGGCTGTCAGAGAACAACTAGTGC
AATTGATGTTTGAAACATTTAATATCTCGGGGTTCTATTCTTCAGAACAA
GCAGTACTGTCTCTTTATGCTGTTGGACGAATCTCAGGATGCACTGTTGA
TATTGGCCATGGGAAAATTGATATTGCTCCAGTAATTGAAGGTGCTGTTC
AGCACATTGCCTCAAGAAGATTTGAGGTTGGAGGTATGGACTTGACAAAG
TTACTTGCGCAAGAACTTGGTAAAACTAATCCTTCGGTGAATCTCAGCCT
CTATGATGTTGAGAAATTGAAAGAGCAATTCTCA
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