FC868972

Overview
NameFC868972
Unique NameFC868972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 9.210e-58
Identity = 102/188 (54.26%), Postives = 131/188 (69.68%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQG--QPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLF 642
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSR+HN+PT S T+LL N+Y  P       D       +   ++QEH+++F+ED+F E   K+GEIE +NVCDNL DH++GNVY++FR              R++ GRP+  E SPVTDFREA CRQ+E   C R G+CNFMH+K I R+LR+ L+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_HUMAN (Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.052e-57
Identity = 99/187 (52.94%), Postives = 134/187 (71.66%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEEL-SKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645
            MAE+L SIFGTEKD+VNC FYFKIG CRHGDRCSRLHN+PT S T++L N+Y+ P       D     +   ++QEH++ F+E++F EL  K+GEIE +NVCDNL DH++GNVYV+FR              R+++G+ +  E SPVTDFRE+ CRQ+E   C RGG+CNFMH++ I ++L++QL+G
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYG 187          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51
Identity = 95/184 (51.63%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQL 639
            MA HL SI+GTE+D+VNC FY+KIGACRHG+RCSR H +P  S T+L  NMY+ P       +  G+    R++ E F+ FYED+F E SK+GE+E L VCDN+ DH++GNVYV+F+              R+YS RP+  E SPVTDFREA CRQ E + C RGG CNFMH K     L + L
Sbjct:    1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH-----EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDL 179          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.749e-32
Identity = 73/169 (43.20%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606
            EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+        R D   P    +       +  + F DFYED+  E    G++    V  NL  H+ GNVYVQ++             GR+Y+GR +  EF PVT ++ A C  FE   C RG +CNF+HV
Sbjct:  166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLE---YSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFL_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.749e-32
Identity = 73/169 (43.20%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606
            EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+        R D   P    +       +  + F DFYED+  E    G++    V  NL  H+ GNVYVQ++             GR+Y+GR +  EF PVT ++ A C  FE   C RG +CNF+HV
Sbjct:  171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLE---YSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 336          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 73/169 (43.20%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606
            EKDR NCPFY K GACR GDRCSR HN PT SPTLL+  M+        R D   P    +       +I + F DFY D+  E    G++    V  NL  H+ GNVYVQ++             GR+Y+GR +  EF PVT ++ A C  FE   C RG +CNF+HV
Sbjct:  170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLE---FSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 335          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: C3H5_ARATH (Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 73/204 (35.78%), Postives = 109/204 (53.43%), Query Frame = 1
Query:   13 DKLSEIPFPSQDKDSA----VKFAGRGLAMAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEEN---NCNRGGYCNFMH 603
            D+ +  P P   + SA    V  A + L         FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED+  E  K+GE+    VC N + H+ GNVYV +R             GR+++G+ +  EF  ++ ++ A C ++ ++    C+RG  CNF+H
Sbjct:  200 DRPTSNPLPPGSEASANYQNVSSAQQILESVAQEVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFL_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 67/166 (40.36%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEH----FEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606
            EK R +CPFY K GACR G+RCSR H+ PT SPTLL+ +M+    M     D      +    +E     F DFY D+  E    G++    V  NL  H+ GNVYVQ++             GR+Y+GR +  EF PVT ++ A C  FE   C +G +CNF+HV
Sbjct:  157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 322          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: C3H16_ORYSJ (Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 62/164 (37.80%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEEN---NCNRGGYCNFMH 603
            ++D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +       +G      +I++ +E+FYED+  E  KFGE+    VC N + H+ GNVYV ++             GR+++G+ I  EF  VT ++ A C ++  +    C+RG  CNF+H
Sbjct:  163 QQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLALE--QDEGLECTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIH 324          
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_PIG (Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFY 333
            MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P       D     +   ++QEH+++F+
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFF 82          
The following BLAST results are available for this feature:
BLAST of FC868972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
U2AF1_DROME9.210e-5854.26Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF4_HUMAN2.052e-5752.94Splicing factor U2AF 26 kDa subunit OS=Homo sapien... [more]
U2AF1_SCHPO3.748e-5151.63Splicing factor U2AF 23 kDa subunit OS=Schizosacch... [more]
U2AFM_HUMAN1.749e-3243.20U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFL_HUMAN1.749e-3243.20U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFM_MOUSE3.896e-3243.20U2 small nuclear ribonucleoprotein auxiliary facto... [more]
C3H5_ARATH8.982e-2935.78Zinc finger CCCH domain-containing protein 5 OS=Ar... [more]
U2AFL_MOUSE7.604e-2840.36U2 small nuclear ribonucleoprotein auxiliary facto... [more]
C3H16_ORYSJ1.297e-2737.80Zinc finger CCCH domain-containing protein 16 OS=O... [more]
U2AF1_PIG1.484e-2357.32Splicing factor U2AF 35 kDa subunit (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31007B07EF AbioticL1 Citrus clementina cDNA clone C31007B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868972 ID=FC868972; Name=FC868972; organism=Citrus clementina; type=EST; length=701bp
GGTGTCTGGATAGACAAGCTTTCGGAAATTCCATTTCCTTCACAAGACAA
GGATTCTGCGGTGAAGTTTGCGGGACGCGGACTAGCCATGGCGGAGCACT
TGACATCAATCTTCGGAACGGAAAAGGACCGCGTGAACTGTCCTTTCTAT
TTCAAGATCGGCGCGTGCCGACACGGCGACCGCTGCTCCCGCCTCCACAA
CCGCCCCACAATTTCCCCAACCCTCCTCCTTTCCAACATGTATCAGCGCC
CCGACATGATCACTCCTGGCGTCGACGCCCAGGGCCAGCCCATCGACCCT
CGCAAGATTCAGGAACACTTCGAGGACTTTTACGAGGACATTTTCGAAGA
GCTCAGCAAGTTCGGCGAAATCGAATGCTTAAACGTCTGCGATAATCTCG
CCGACCACATGATTGGCAATGTCTATGTCCAGTTCAGAGAGGAAGAGCAA
GCTGCAGCAGCATTGCATGCTCTGCAAGGACGATTCTACTCCGGCCGTCC
CATCATTGTTGAATTTTCACCCGTTACTGATTTCCGTGAGGCCACTTGTC
GGCAGTTTGAGGAGAATAACTGTAACCGTGGCGGTTATTGTAACTTTATG
CACGTCAAATTGATTGGCAGGGATCTGAGAAAACAACTTTTTGGGAGGTA
CCGTCGTAGAAGCCGAAGCAGGAGTTTCAGTCCCATTCCTCATCTTCGTT
C
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