FC868972
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 223.402 bits (568), Expect = 9.210e-58 Identity = 102/188 (54.26%), Postives = 131/188 (69.68%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQG--QPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLF 642 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSR+HN+PT S T+LL N+Y P D + ++QEH+++F+ED+F E K+GEIE +NVCDNL DH++GNVY++FR R++ GRP+ E SPVTDFREA CRQ+E C R G+CNFMH+K I R+LR+ L+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF4_HUMAN (Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2) HSP 1 Score: 222.246 bits (565), Expect = 2.052e-57 Identity = 99/187 (52.94%), Postives = 134/187 (71.66%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEEL-SKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQLFG 645 MAE+L SIFGTEKD+VNC FYFKIG CRHGDRCSRLHN+PT S T++L N+Y+ P D + ++QEH++ F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I ++L++QL+G Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYG 187
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2) HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51 Identity = 95/184 (51.63%), Postives = 120/184 (65.22%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRKQL 639 MA HL SI+GTE+D+VNC FY+KIGACRHG+RCSR H +P S T+L NMY+ P + G+ R++ E F+ FYED+F E SK+GE+E L VCDN+ DH++GNVYV+F+ R+YS RP+ E SPVTDFREA CRQ E + C RGG CNFMH K L + L Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH-----EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDL 179
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.749e-32 Identity = 73/169 (43.20%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606 EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P + + + F DFYED+ E G++ V NL H+ GNVYVQ++ GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLE---YSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFL_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.749e-32 Identity = 73/169 (43.20%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606 EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P + + + F DFYED+ E G++ V NL H+ GNVYVQ++ GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLE---YSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 336
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32 Identity = 73/169 (43.20%), Postives = 91/169 (53.85%), Query Frame = 1 Query: 121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606 EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ M+ R D P + +I + F DFY D+ E G++ V NL H+ GNVYVQ++ GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLE---FSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 335
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: C3H5_ARATH (Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29 Identity = 73/204 (35.78%), Postives = 109/204 (53.43%), Query Frame = 1 Query: 13 DKLSEIPFPSQDKDSA----VKFAGRGLAMAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEEN---NCNRGGYCNFMH 603 D+ + P P + SA V A + L FGTE+D+ +CPF+ K GACR G RCSR+H P S TLL+ NMY P IT D +G + + +E+FYED+ E K+GE+ VC N + H+ GNVYV +R GR+++G+ + EF ++ ++ A C ++ ++ C+RG CNF+H Sbjct: 200 DRPTSNPLPPGSEASANYQNVSSAQQILESVAQEVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AFL_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28 Identity = 67/166 (40.36%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEH----FEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 606 EK R +CPFY K GACR G+RCSR H+ PT SPTLL+ +M+ M D + +E F DFY D+ E G++ V NL H+ GNVYVQ++ GR+Y+GR + EF PVT ++ A C FE C +G +CNF+HV Sbjct: 157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 322
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: C3H16_ORYSJ (Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27 Identity = 62/164 (37.80%), Postives = 93/164 (56.71%), Query Frame = 1 Query: 121 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEEN---NCNRGGYCNFMH 603 ++D+ +CPF+ K GACR G RCSR+H P S TLL+ NMY P + +G +I++ +E+FYED+ E KFGE+ VC N + H+ GNVYV ++ GR+++G+ I EF VT ++ A C ++ + C+RG CNF+H Sbjct: 163 QQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLALE--QDEGLECTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIH 324
BLAST of FC868972 vs. ExPASy Swiss-Prot
Match: U2AF1_PIG (Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=3 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23 Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1 Query: 88 MAEHLTSIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFY 333 MAE+L SIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P D + ++QEH+++F+ Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFF 82 The following BLAST results are available for this feature:
BLAST of FC868972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868972 ID=FC868972; Name=FC868972; organism=Citrus clementina; type=EST; length=701bpback to top |