FC868978

Overview
NameFC868978
Unique NameFC868978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 74/192 (38.54%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  162 ESFDESFEGRWIVS--QKDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            E F++ +E +W+ S  ++DE   G W  +  + +    D G+   E  + YAI     E  S K  T+V Q+ V+ +  L+CGG Y+K L    +G V  K+F  ++PY IMFGPD CG +T KVH IL       GE   H +K      +D+LTHVYT IL+PD    ILID  EK  G+     D  PP
Sbjct:   28 ERFEDGWESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPE-FSNKGKTLVFQFSVKHEQKLDCGGGYMKLL----SGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILT-----KGE-TNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPP 208          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 69/204 (33.82%), Postives = 101/204 (49.51%), Query Frame = 3
Query:  126 LISASDDATILYESFDESFEGRWIVSQ---KDEYKGVWKHSKS----EGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            L+ A+       E+FD S+  RW  S     D   G +K +      +   D G+  G  +K +AI   L           V+Q+ V+ +  L+CGG Y+K + P  +     EF  ++PY IMFGPD CG +T KVH IL +K         + +K      +D+LTHVYT ++KPDN  ++LID +E A G+     D  PP
Sbjct:   12 LVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVV-PATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKN------YLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPP 208          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 64/186 (34.41%), Postives = 95/186 (51.08%), Query Frame = 3
Query:  171 DESFEGRWIVSQKD-----EYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQP 710
            D+S+E  W+ S+       ++K       S+  +D GL   E A+ YA+ ++  +P S +   +V+Q+ V+ +  ++CGG YLK     +     K+   E+PY IMFGPD CG  T KVH I  +K         H +K       D  TH+YT I+KPDN   +LID E+   G+  A  DF P
Sbjct:   29 DDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLP 204          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = 3
Query:  129 ISASDDATILYESFDESFEGRWIVSQ--KDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A        E F++ +E RW+ S+  KDE   G W H+  + +   ED G+   E  + YAI  E  E  S KD T+VLQ+ V+ +  L+CGG Y+K L     G V  K    ++ Y I+  PD    +T KVH IL     K G+   H +K      +D+LTHVYT I++PD    ILID EEK  G+     D  PP
Sbjct:   20 VAAVAGEVFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPE-FSNKDKTLVLQFSVKHEQKLDCGGGYVKLL----GGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILT----KDGK--NHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPP 211          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 67/202 (33.17%), Postives = 101/202 (50.00%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEG--HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A+D A    E F   +++  RW+ S+   D  K V    K  G   +D GL   + A+ YA+  +  EP S K  T+V+Q+ V+ +  ++CGG Y+K      +G   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 67/202 (33.17%), Postives = 99/202 (49.01%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A+D A    E F   +++  RW+ S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K       G   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PGGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 65/193 (33.68%), Postives = 94/193 (48.70%), Query Frame = 3
Query:  156 LYESFD-ESFEGRWIVSQ---KDEYKGVWKHSK--SEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            L E+FD E++E  WI S+   K+  K V       ++   D G+   + A+ YA  ++ D   S +D  +V+Q+ V+ +  ++CGG Y+K     +      +   ESPY IMFGPD CG  T KVH I  +K         H +        D  TH YT I++PDN   +LID E+   GN     DF  P
Sbjct:   23 LKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDG-FSNEDKPLVVQFSVKHEQNIDCGGGYVKLF---DCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 63/175 (36.00%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  174 ESFEGRWIVSQKDEYKGVWKHSKSE--GHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGAT-NKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGN 683
            E +  RW+ S  D   G ++ S  +  GH+  D GL   + ++ YAI     +P S K  T+V+QY V+ +  ++CGG Y+K   P +     K+ + +S Y IMFGPD CG    KVH IL  KN    +Y  H  K P     D  TH+YT IL+PD    + +DG+    G+
Sbjct:   31 ERWRNRWVQSTNDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVF-PSDLD--QKKMNGKSQYYIMFGPDICGFDIKKVHVILYFKN----QY--HENKKPIRCKVDGFTHLYTLILRPDLSYEVKVDGQSIESGS 195          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 69/202 (34.16%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 69/202 (34.16%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
The following BLAST results are available for this feature:
BLAST of FC868978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CALR_BERST1.303e-2238.54Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_CHLRE3.792e-2233.82Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_BOMMO1.441e-2134.41Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_MAIZE4.192e-2136.95Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_MOUSE1.761e-1933.17Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_RAT3.004e-1933.17Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_DROME1.491e-1833.68Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR3_MOUSE1.491e-1836.00Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]
CALR_MACFU3.322e-1834.16Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA3.322e-1834.16Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC31007C01EF AbioticL1 Citrus clementina cDNA clone C31007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868978 ID=FC868978; Name=FC868978; organism=Citrus clementina; type=EST; length=720bp
CATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTCTCTCTCTC
TCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCTCTCCTGCT
TTTCGCAGCTTTCGATTCATTTCAATTGATCTCCGCTTCTGATGATGCCA
CGATCTTGTACGAGTCGTTTGACGAGTCATTCGAAGGACGATGGATCGTT
TCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAGAGTGAGGG
TCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAAGTACGCGA
TAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAACTGTTGTC
CTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGTGGTGCATA
TCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAAGGAGTTCG
ACAATGAATCTCCGTATATGATTATGTTTGGACCTGATAAATGTGGTGCA
ACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAGAGTGGAGA
GTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAAAC
TGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAATT
TTAATTGATGGAGAGGAGAAAGCAGAAGGCAATTTCCTCGCTGCTGATGA
TTTTCAGCCACCGCTCATTC
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