FC868978

Overview
NameFC868978
Unique NameFC868978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 69/202 (34.16%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 65/202 (32.18%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A++ A    E F   + +  RW+ S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K           K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAAEPAVYFKEQFLDGDDWTNRWVESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 66/202 (32.67%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A++      E F   + +  RWI S+   D  K V    K  G +  D GL   + A+ YA+     EP S K   +V+Q+ V+ +  ++CGG Y+K      AG   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAAAEPVVYFKEQFLDGDGWTERWIESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQPLVVQFTVKHEQNIDCGGGYVKLF---PAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 68/202 (33.66%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++ ++ A    E F   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  +   G+     DF PP
Sbjct:   14 LAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 66/202 (32.67%), Postives = 97/202 (48.02%), Query Frame = 3
Query:  129 ISASDDATILYESF--DESFEGRWIVSQK--DEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGNFLAADDFQPP 713
            ++A+D      E F   + +  RWI S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K      AG    +   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++P+N   + ID  +   G+     DF PP
Sbjct:   14 LAAADPTVYFKEQFLDGDGWTERWIESKHKPDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPP 205          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 62/175 (35.43%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  174 ESFEGRWIVSQKDEYKGVWKHSKSE--GHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNK-VHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGN 683
            E +  RW+ S  D   G ++ S     GH+  D GL   + ++ YAI     +P S K  T+++QY V+ +  ++CGG Y+K L P +     K  + +S Y IMFGPD CG   K VH IL  KN    +Y  H  K       D  TH+YT +L+PD    + IDG+    G+
Sbjct:   31 ERWRNRWVHSTNDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARF-KPFSNKGKTLIIQYTVKHEQKMDCGGGYIK-LFPADVD--QKNLNGKSQYYIMFGPDICGFDIKTVHVILHFKN----QY--HANKKSIRCKVDSFTHLYTLVLRPDLTYEVKIDGQSIESGS 195          
BLAST of FC868978 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 62/175 (35.43%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  174 ESFEGRWIVSQKDEYKGVWKHSKSE--GHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKAEGN 683
            E +  RW+ S  D   G ++ S  +  GH+  D GL   +  + YAI     +P S K  T+V+QY V+ +  ++CGG Y+K      A    K  + +S Y IMFGPD CG    KVH IL  KN        H  K       D  TH+YT IL+PD    + IDG+    G+
Sbjct:   31 EHWRNRWLQSTNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVF---PADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNK------YHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIESGS 195          
The following BLAST results are available for this feature:
BLAST of FC868978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CALR_CERAE3.322e-1834.16Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_CRIGR4.338e-1832.18Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_RABIT5.666e-1832.67Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_HUMAN9.665e-1833.66Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_BOVIN9.665e-1832.67Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR3_BOVIN4.796e-1735.43Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]
CALR3_HUMAN8.182e-1735.43Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31007C01EF AbioticL1 Citrus clementina cDNA clone C31007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868978 ID=FC868978; Name=FC868978; organism=Citrus clementina; type=EST; length=720bp
CATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTCTCTCTCTC
TCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCTCTCCTGCT
TTTCGCAGCTTTCGATTCATTTCAATTGATCTCCGCTTCTGATGATGCCA
CGATCTTGTACGAGTCGTTTGACGAGTCATTCGAAGGACGATGGATCGTT
TCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAGAGTGAGGG
TCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAAGTACGCGA
TAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAACTGTTGTC
CTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGTGGTGCATA
TCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAAGGAGTTCG
ACAATGAATCTCCGTATATGATTATGTTTGGACCTGATAAATGTGGTGCA
ACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAGAGTGGAGA
GTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAAAC
TGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAATT
TTAATTGATGGAGAGGAGAAAGCAGAAGGCAATTTCCTCGCTGCTGATGA
TTTTCAGCCACCGCTCATTC
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