FC868986

Overview
NameFC868986
Unique NameFC868986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_ASPFC (Ribosome biogenesis protein ytm1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 1
Query:  145 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD---GSNPGF-------------ILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVT---VATGFKDQTLRLWK 663
            R+V+V+  +K +    +P N+  I +P++L R+ LS++VN LL    P     PF+FL+NG  +R S++++L A GISAE  LEIEY++A+ P        HDDWVS+ D    ++P               IL+G YD L RVW    + + I+     A    +       K+VT   +A+   D+T+RLWK
Sbjct:   18 RQVRVQLTSK-QEDIALPDNTGPILVPTSLRRYALSTLVNKLLGNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFQHDDWVSSTDVLSATSPAATWASATISQGQEKILSGSYDGLLRVW---NMSSQIVATSPAAADGGHTASIKAAKFVTPNQIASAGLDRTVRLWK 203          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_ASPNC (Ribosome biogenesis protein ytm1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 72/218 (33.03%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   91 GQMDMNIETPEDQNEENSRRVQVRFKTK-LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD--------------GSNPG--FILTGCYDNLGRVWKAGGVCTHILE-----GHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            G  D        Q+ +   RVQ+  K + +  P+   +  I +P+ L R+ LS++VNNLL    P     PF+FL+NG  +R S++++L A GISAE  LEIEYI+A+ P        HDDWV +VD                +PG   IL+G YD L RVW                GH  ++ +   I  + +    V+ G  D+T+RLWK +  +
Sbjct:    3 GVQDSTSAAASSQSAQRQVRVQLVSKQEDIALPES--TGPILVPTGLRRYALSTLVNNLLGNDKPV----PFEFLINGAFLRTSIDEYLTANGISAETTLEIEYIRALIPPLHIASFEHDDWVGSVDVLSATSLATSWASAVVSPGQERILSGSYDGLLRVWNMSSQIVATSPSPADGGHGASIKAAKFISPNSI----VSAGL-DRTVRLWKYNESD 209          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_ASPCL (Ribosome biogenesis protein ytm1 OS=Aspergillus clavatus GN=ytm1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 63/176 (35.80%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  208 IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD--------------GSNPG--FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVT---VATGFKDQTLRLWKVDAEE 678
            I +P+ L R+ LS++VNNLL    P     PF+FL+NG  +R S++++L A GISAE  LEIEY++A+ P        HDDWVS+ D                +PG   IL+G YD L RVW    + + ++     A    +       K+VT   + +   D+T+RLWK    E
Sbjct:   40 ILVPTGLRRYALSTLVNNLLSNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFQHDDWVSSTDVLSATSPAATWASAAISPGQERILSGSYDGLLRVW---NMSSQVVATSPPAADGGHAASIKAAKFVTPNQIVSAGLDRTVRLWKYSESE 208          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_NEUCR (Ribosome biogenesis protein ytm-1 OS=Neurospora crassa GN=ytm-1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 67/199 (33.67%), Postives = 103/199 (51.76%), Query Frame = 1
Query:  124 DQNEENSRRVQVRFKTKLKPPQKVPSN-SIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD------------GSN----PGFILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            D   E+  +V+V F T+ +  Q   S   + +P+++ R+GLS ++N+       +  S PFDFLVNG  +R SLE++L A G+S E  + ++Y++++ P   E    HDDWVSAVD            G N       IL+  YD L R+W A G  + T     H G  +S+   K   L    +A+   D+T+R+WK
Sbjct:    2 DHPTESGAQVRVTFTTQEEDIQLDESKRQLLVPADIRRYGLSRILNSESML---DTNSIPFDFLVNGSFLRGSLEEYLNANGLSLETNITLQYVRSLIPPTYEASFEHDDWVSAVDVLSATSPAGRWSGDNFQRGQDRILSASYDGLLRIWDASGNVIGTSPSGSHGGHTASIKAAKF--LSSTQIASAGMDRTVRVWK 195          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_BOTFB (Ribosome biogenesis protein ytm1 OS=Botryotinia fuckeliana (strain B05.10) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 66/197 (33.50%), Postives = 101/197 (51.27%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD---GSNPG-------------FILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            +VQV F T   P  ++P     + +P+N+ R+GLS ++N+  +A+       PFDFL+NG  +R +L+++L A G+S+E  L ++Y++++ P   E    HDDWVS+VD   GS+                IL+G YD L RVW   G  + T       G  S V   K   L    VA+   D+T+R+W     E
Sbjct:    5 QVQVHFSTT-SPDIELPEGKQQLLVPTNVRRYGLSQILNS--EAMLDTSSPIPFDFLINGTFLRTTLDEYLTANGLSSETTLNLQYVRSLIPPLYEASFEHDDWVSSVDVLSGSSAAGAWGKNSIVEGQERILSGSYDGLLRVWNKSGQAIATSAPASIGGHTSGVKAAK--WLSARQVASAGLDRTIRIWNYSESE 196          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_ASPTN (Ribosome biogenesis protein ytm1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ytm1 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 69/196 (35.20%), Postives = 104/196 (53.06%), Query Frame = 1
Query:  145 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD---GSNPGF-------------ILTGCYDNLGRVWKAGG--VCTHILE---GHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            R+V+V+  +K +    +P ++  I IP+ L R+ LS++VNNLL    P     PF+FL+NG  +R S++++L A GISAE  LEIEY++A+ P        HDDWVS+VD    ++P               IL+G YD   RVW      V T       GH  ++ +   +  + +    V+ G  D+T+RLWK
Sbjct:   12 RQVRVQLTSK-QEDIALPEDTGPILIPTGLRRYALSTLVNNLLGNEKPI----PFEFLINGAFLRTSIDEYLTANGISAETTLEIEYVRALIPPLHIASFEHDDWVSSVDVLSATSPAASWASASVPQGQERILSGSYDGFLRVWNMSSQVVATSPAATEGGHTASIKAAKFVSPNSI----VSAGL-DRTVRLWK 197          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_ANOGA (Ribosome biogenesis protein WDR12 homolog OS=Anopheles gambiae GN=AGAP007244 PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.082e-19
Identity = 63/173 (36.42%), Postives = 94/173 (54.34%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQ-AVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            ++QV F TK K    VP    +I +N+    L++++  +L+ A N +     FDFL+NGE VR +L Q L  + IS E  +E+EY++     + ++  LHDDWVSAV   + G+ILTG YDN   +W   G     + GH  AV  V  I  +    V  A+   DQT+ +W+
Sbjct:   12 QLQVHFTTKQKQ-YAVPDVPYSIRANVGCSELNTLLGTVLKDAGNKQGAKVAFDFLLNGEFVRSTLSQHLKERDISFEDTIELEYVERYPAPQPQDCLLHDDWVSAVQAKD-GWILTGTYDNTVNLWNTKGKHKLTIPGHVAAVKGVAWISLNEQTGV-FASASHDQTIMIWE 181          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_PYRTR (Ribosome biogenesis protein ytm1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 71/197 (36.04%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-----GSNPGFILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVD--------AEELVNH 690
            +VQ+R  T+    Q     N + + ++LTR  LS++VN LL     +    PFD L+NGE +R ++++FL   GI+AE  L++EY +A+ P        HDDWVSAVD      S    IL+  YD L RVW   G  + T     + G ++S+   K    K + VA G  D  +R++K D        A ELVNH
Sbjct:    9 KVQIRLTTRDSSLQISEEPNVLLVQTSLTRHKLSTLVNELLH--RGDETRIPFDILINGEFLRTTIDEFLTKNGINAESTLDVEYTRALVPPLNVTSFEHDDWVSAVDVLSGVQSGQERILSASYDGLVRVWNTSGDVLATSEAPNNGGRITSLKTAKWLSEKKM-VAAGL-DNNVRVYKYDDDARTIITALELVNH 201          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_DEBHA (Ribosome biogenesis protein YTM1 OS=Debaryomyces hansenii GN=YTM1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 1
Query:  136 ENSRRVQVRFKTKLKPPQKVPSNS-IAIPSNLTRFGLSSVVNNLLQ--AVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNP--------------GFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            ++  ++++ F T  +      S++ + +P +L R+GLS +VN+LL+      E K  PFDFL++G L+R SLE +L+  G+S+E  L +EY +AV P        +DDW+S++D  NP                IL+G YD + R +   G       GH G + SV  I         + +   D+ +RLWK   +
Sbjct:    3 DDKSQIKINFFTNEEDESLHTSDAPLYVPVSLKRYGLSEIVNHLLKKDGETDETKPVPFDFLIDGVLLRTSLEDYLVKNGLSSEASLNLEYTRAVLPPSFLASFNNDDWISSLDTINPLSASVKASNMSISQPKILSGSYDGIVRTYNMSGKVEKQYVGHSGPIRSVKWISP-----TRIVSSGNDRQVRLWKTSID 194          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_SCLS1 (Ribosome biogenesis protein ytm1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 65/197 (32.99%), Postives = 100/197 (50.76%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD----GSNPGF------------ILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678
            +VQV F T   P  ++P     + +P+N+ R+GLS ++N+  +A+       PFDFL+NG  +R +L+++L A G+S+E  L ++Y++++ P   E    HDDWVS+VD     S  G             IL+G YD L RVW   G  + T       G  S V   K   L    +A+   D+T+R+W     E
Sbjct:    5 QVQVYFTTT-SPDIQLPEEKQQLLVPTNVRRYGLSQILNS--EAMLDTSSPIPFDFLINGTFLRTTLDEYLTANGLSSETTLNLQYVRSLIPPLYEASFEHDDWVSSVDVYSGSSAVGIWGSSSVEAGQERILSGSYDGLLRVWNKSGQAIATSAPASAGGHTSGVKSAKF--LSTKQIASAGLDRTIRIWNYSEAE 196          
The following BLAST results are available for this feature:
BLAST of FC868986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
YTM1_ASPFC3.719e-2035.05Ribosome biogenesis protein ytm1 OS=Aspergillus fu... [more]
YTM1_ASPNC4.857e-2033.03Ribosome biogenesis protein ytm1 OS=Aspergillus ni... [more]
YTM1_ASPCL4.857e-2035.80Ribosome biogenesis protein ytm1 OS=Aspergillus cl... [more]
YTM1_NEUCR6.344e-2033.67Ribosome biogenesis protein ytm-1 OS=Neurospora cr... [more]
YTM1_BOTFB1.082e-1933.50Ribosome biogenesis protein ytm1 OS=Botryotinia fu... [more]
YTM1_ASPTN1.082e-1935.20Ribosome biogenesis protein ytm1 OS=Aspergillus te... [more]
WDR12_ANOGA1.082e-1936.42Ribosome biogenesis protein WDR12 homolog OS=Anoph... [more]
YTM1_PYRTR1.413e-1936.04Ribosome biogenesis protein ytm1 OS=Pyrenophora tr... [more]
YTM1_DEBHA1.846e-1930.96Ribosome biogenesis protein YTM1 OS=Debaryomyces h... [more]
YTM1_SCLS14.112e-1932.99Ribosome biogenesis protein ytm1 OS=Sclerotinia sc... [more]

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Properties
Property NameValue
Genbank descriptionC31007C09EF AbioticL1 Citrus clementina cDNA clone C31007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868986 ID=FC868986; Name=FC868986; organism=Citrus clementina; type=EST; length=736bp
GAGATTCCCTCCTCTTTAACTTCACCCTAGCTCAATCTGTGATTCCGCAA
ATTAACTTCATCCCATTAAAAATTAAAAAACCGAAAAAAAGGGCAAATGG
ACATGAACATCGAAACACCGGAAGATCAAAATGAGGAAAATTCGAGGCGC
GTTCAAGTTCGCTTCAAAACGAAGCTAAAACCTCCGCAAAAAGTTCCAAG
CAACTCAATTGCAATCCCTTCTAATCTTACTCGCTTCGGTCTATCTTCTG
TCGTGAACAACTTGCTACAAGCAGTGAATCCTGAGTGGAAATCTGAGCCG
TTTGATTTTTTGGTCAATGGGGAACTGGTTCGGATGTCGCTTGAGCAGTT
TCTTCTCGCCAAGGGCATTTCTGCGGAAAAAGTTCTGGAAATTGAGTACA
TAAAGGCTGTGGCACCACAAAAAGAGGAAGAACCATCTTTACATGATGAC
TGGGTCAGTGCAGTTGATGGTTCTAATCCTGGGTTCATCTTAACTGGTTG
CTATGATAATTTGGGAAGGGTCTGGAAAGCAGGTGGAGTGTGTACACATA
TATTGGAAGGACACTGTGGTGCAGTCTCTTCTGTTAATATCATTAAGTCT
GATGGTTTGAAATATGTCACTGTAGCCACTGGCTTCAAAGATCAGACCTT
GAGATTGTGGAAAGTTGATGCAGAGGAGCTAGTTAATCATCCTAAGAGAT
AAGGTCATTCAAAATTTACGTGGGCATAAGCATCTG
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