FC868986

Overview
NameFC868986
Unique NameFC868986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROER (Ribosome biogenesis protein WDR12 homolog OS=Drosophila erecta GN=GG10358 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 65/177 (36.72%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  133 EENSRRVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            E    +VQV  KTK +    VP    AI   +T   L++ VN LL+  +    ++ FDFLV  E +R  L   L  K IS E  +EIEY++     + ++  LHDDWVSAV  S   +IL+GCYDN   +W   G     + GH   + +V+ I  D      V+T  +DQT  LW+
Sbjct:    4 ENGEGQVQVHLKTK-QEHYAVPDVPYAIDGTVTTVELNTFVNALLRQKDGSSDTD-FDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKASGK-WILSGCYDNTLNLWTNKGKHILTISGHTAPIKAVDWISLDEETGRFVSTS-QDQTAMLWQ 176          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_CULQU (Ribosome biogenesis protein WDR12 homolog OS=Culex quinquefasciatus GN=CPIJ001500 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 64/173 (36.99%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQ-AVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            ++Q+   TK K    VP    +I +N++   L+ +VN LL+ A N E     FDFL+NGE     L Q L  + +S E  +E+EY++     + ++  LHDDWVSAV+ +   +ILTGCYDN   +W   G     + GH   V  V  I  D  K V  A+  +DQT+ LW+
Sbjct:   12 QLQLHLITKQKQ-FAVPDVPYSIRANVSTKELNVLVNTLLKDAGNAEAGKVEFDFLLNGEF---PLGQHLKERDVSFEDTVELEYVERYPAPEPQDCLLHDDWVSAVE-ARDNWILTGCYDNTLNLWTTKGKHKLTIPGHIAPVKGVTWISLDEEKGV-FASASQDQTVMLWE 178          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_TRIAD (Ribosome biogenesis protein WDR12 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_55049 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 59/181 (32.60%), Postives = 91/181 (50.28%), Query Frame = 1
Query:  124 DQNEENSRRVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWK-SEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            + ++ +S+++Q+R    L        N +++PS      LS  V+ LL A + E   S  FDF +N +L+R SLE ++ +K +S E V+E+ Y +   P       LH DW+ +V  S    IL G  D   R+W   G    I +GH   V+ V  I  D   + T+ T  +D TLRLW+
Sbjct:    4 ENDKTSSKQLQIRL-VALNKRFDTSGNLLSLPSRFGCDELSETVHTLLSANDIEIPASVQFDFAINNDLLRDSLEGYVTSKNLSTESVIEVVYFQKEPPPDFLNTILHSDWIKSV-RSKDDCILAGSLDGTARIWNMAGEEYAIFKGHESYVNGVEWISKDN-NHATIVTASQDGTLRLWE 181          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROVI (Ribosome biogenesis protein WDR12 homolog OS=Drosophila virilis GN=GJ17641 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.755e-18
Identity = 64/177 (36.16%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  133 EENSRRVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            E    +VQV  KTK +    VP    AI  +++   L+  +N LLQ+   E     FDFLV  E +R  L   L  K IS E  ++IEY++     + ++  LHDDWVSAV      +ILTGCYDN   +W   G     + GH   + +V+ I  D      V+T  +DQT  LW+
Sbjct:    4 ENGEGQVQVHLKTK-QEHYAVPDVPYAIDGSVSTTELNIFLNALLQSKGAE--GVDFDFLVFDEYLRGRLCDHLREKAISFEDAIDIEYVERFPAPEPQDCLLHDDWVSAVKACGK-WILTGCYDNTINIWTNKGKHKLTIPGHTAPIKAVDWISMDDENGRFVSTS-QDQTAMLWQ 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROSI (Ribosome biogenesis protein WDR12 homolog OS=Drosophila simulans GN=GD22226 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.755e-18
Identity = 65/172 (37.79%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            +VQV  KTK +    VP    AI   +T   L++ VN LL+  +    +E FDFLV  E +R  L   L  K IS E  +EIEY++     + ++  LHDDWVSAV      +IL+GCYDN   +W   G     + GH   + +V+ I  D      V+T  +DQT  LWK
Sbjct:    9 QVQVHLKTK-QEHYAVPDVPYAIDGTVTTVELNTFVNALLRQKDGSSDTE-FDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKARGK-WILSGCYDNSLNLWTNKGKHILTISGHTAPIKAVDWISLDEETGRFVSTS-QDQTAMLWK 176          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROSE (Ribosome biogenesis protein WDR12 homolog OS=Drosophila sechellia GN=GM11446 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            +VQV  KTK +    VP    AI   +T   L++ VN LL+  +    ++ FDFLV  E +R  L   L  K IS E  +EIEY++     + ++  LHDDWVSAV      +IL+GCYDN   +W   G     + GH   + +V+ I  D      V+T  +DQT  LWK
Sbjct:    9 QVQVHLKTK-QEQYAVPDVPYAIDGTVTTVELNTFVNALLRQKDGSSDTD-FDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKARGK-WILSGCYDNSLNLWTNKGKHILTISGHTAPIKAVDWISLDEETGRFVSTS-QDQTAMLWK 176          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROPS (Ribosome biogenesis protein WDR12 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA19813 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 64/172 (37.21%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            +VQV  KTK +    VP    AI   +T   L++ VN LL +      +  FDFLV  E +R  L   L  K IS E  +EIEY++     + ++  LHDDWVSAV  S   +ILTGCYDN   +W   G     + GH   + +V+ I  D      V++  +DQT  LW+
Sbjct:    9 QVQVHLKTK-QEHYAVPDVPYAIDGTVTTAELNTFVNALLLSKGSS--AVDFDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKASGK-WILTGCYDNTLNIWTNKGKHILTIPGHTAPIKAVDWISLDDDTGRFVSSS-QDQTAMLWQ 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROPE (Ribosome biogenesis protein WDR12 homolog OS=Drosophila persimilis GN=GL26386 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 64/172 (37.21%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            +VQV  KTK +    VP    AI   +T   L++ VN LL +      +  FDFLV  E +R  L   L  K IS E  +EIEY++     + ++  LHDDWVSAV  S   +ILTGCYDN   +W   G     + GH   + +V+ I  D      V++  +DQT  LW+
Sbjct:    9 QVQVHLKTK-QEHYAVPDVPYAIDGTVTTAELNTFVNALLLSKGSS--AVDFDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKASGK-WILTGCYDNTLNIWTNKGKHILTIPGHTAPIKAVDWISLDDDTGRFVSSS-QDQTAMLWQ 175          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DROME (Ribosome biogenesis protein WDR12 homolog OS=Drosophila melanogaster GN=CG6724 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWK 663
            +VQV  KTK +    VP    AI   +T   L++ VN LL+  +    ++ FDFLV  E +R  L   L  K IS E  +EIEY++     + ++  LHDDWVSAV      +IL+GCYDN   +W   G     + GH   + +V+ I  D      V+T  +DQT  LW+
Sbjct:    9 QVQVHLKTK-QEHYAVPDVPYAIDGTVTTVELNTFVNALLRQKDGSSDTD-FDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQDCLLHDDWVSAVKARGK-WILSGCYDNTLNLWTNKGKHILTISGHTAPIKAVDWISLDEETGRFVSTS-QDQTAMLWQ 176          
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_PHANO (Ribosome biogenesis protein YTM1 OS=Phaeosphaeria nodorum GN=YTM1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 67/202 (33.17%), Postives = 99/202 (49.01%), Query Frame = 1
Query:  133 EENSRRVQVRFKTK---LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD----------------GSNPGFILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675
            E +  +V  RF T+   L  P +    ++ I +NL R  LS ++N LL     E    PFD L+NG+ +R +++++L   GI+AE  LE+EY +A+ P        HDDWVSAVD                 S    IL+  YD L RVW   G  + T     + G ++S+   K    K + VA G  D T+R++K D +
Sbjct:    4 EISDTKVTARFTTRDENLHLPDQ--DRTLLISTNLKRVNLSKILNELL---GREDDRIPFDILINGQFLRTTVDEYLTKNGINAETRLEVEYTRALVPPLNVTSFEHDDWVSAVDVLSQTSRAGAWSGGSVQSGQERILSASYDGLVRVWNTSGDVLATSEAPNNGGRITSLKSAKWLSDKKI-VAAGM-DNTVRVFKYDED 198          
The following BLAST results are available for this feature:
BLAST of FC868986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WDR12_DROER4.546e-1836.72Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
WDR12_CULQU4.546e-1836.99Ribosome biogenesis protein WDR12 homolog OS=Culex... [more]
WDR12_TRIAD5.938e-1832.60Ribosome biogenesis protein WDR12 homolog OS=Trich... [more]
WDR12_DROVI7.755e-1836.16Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
WDR12_DROSI7.755e-1837.79Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
WDR12_DROSE1.323e-1737.21Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
WDR12_DROPS2.256e-1737.21Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
WDR12_DROPE2.256e-1737.21Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
WDR12_DROME3.849e-1736.63Ribosome biogenesis protein WDR12 homolog OS=Droso... [more]
YTM1_PHANO1.463e-1633.17Ribosome biogenesis protein YTM1 OS=Phaeosphaeria ... [more]

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Properties
Property NameValue
Genbank descriptionC31007C09EF AbioticL1 Citrus clementina cDNA clone C31007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868986 ID=FC868986; Name=FC868986; organism=Citrus clementina; type=EST; length=736bp
GAGATTCCCTCCTCTTTAACTTCACCCTAGCTCAATCTGTGATTCCGCAA
ATTAACTTCATCCCATTAAAAATTAAAAAACCGAAAAAAAGGGCAAATGG
ACATGAACATCGAAACACCGGAAGATCAAAATGAGGAAAATTCGAGGCGC
GTTCAAGTTCGCTTCAAAACGAAGCTAAAACCTCCGCAAAAAGTTCCAAG
CAACTCAATTGCAATCCCTTCTAATCTTACTCGCTTCGGTCTATCTTCTG
TCGTGAACAACTTGCTACAAGCAGTGAATCCTGAGTGGAAATCTGAGCCG
TTTGATTTTTTGGTCAATGGGGAACTGGTTCGGATGTCGCTTGAGCAGTT
TCTTCTCGCCAAGGGCATTTCTGCGGAAAAAGTTCTGGAAATTGAGTACA
TAAAGGCTGTGGCACCACAAAAAGAGGAAGAACCATCTTTACATGATGAC
TGGGTCAGTGCAGTTGATGGTTCTAATCCTGGGTTCATCTTAACTGGTTG
CTATGATAATTTGGGAAGGGTCTGGAAAGCAGGTGGAGTGTGTACACATA
TATTGGAAGGACACTGTGGTGCAGTCTCTTCTGTTAATATCATTAAGTCT
GATGGTTTGAAATATGTCACTGTAGCCACTGGCTTCAAAGATCAGACCTT
GAGATTGTGGAAAGTTGATGCAGAGGAGCTAGTTAATCATCCTAAGAGAT
AAGGTCATTCAAAATTTACGTGGGCATAAGCATCTG
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