FC869038

Overview
NameFC869038
Unique NameFC869038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  342 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKT 713
            AIVTG + GIG  TA+ LA  G+HVI+A  N +  K V   I +E  + KV+ +  D++S+ S+R+F  ++  +  PL++LINNAG+M  P   ++D  E  F  N            DT+K++
Sbjct:   46 AIVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKES 169          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTA 716
            G T IVTGA++GIG +TA  LA RG +VI+A R+M     A KD+R     E  + +V A  LD++SL S+R+FA +   +   ++IL+NNA +M  P   ++D  E+QF  N            D +K +A
Sbjct:   38 GKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIR----GETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASA 165          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E   A N
Sbjct:   39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVN 147          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 44/135 (32.59%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  312 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTA 716
            T  +   G  AIVTGA++GIG ETA+ LA RG  V +A R++  G+     I     +++V   +LD++   S+R FA ++ ++ + L++LINNAG+M  P+  + D  E+    N            + +K++A
Sbjct:   31 TSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA 165          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E     N
Sbjct:   39 GKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVN 147          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  312 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTA 716
            T  +   G   +VTGA++GIG ETA+ LA RG  V +A R++  G+ V + I     + +V   +LD+S   S+R FA  + ++ + L++LINNAG+M  P+  + D  E+    N            + +K++A
Sbjct:   34 TSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA 168          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA-------------KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            G T ++TGA+SG+G  TA  L   G  VIM  R+ A  ++    + +E+  A             ++   ELD++SL SVR F  E   +   L++LINNAGI   P+M ++D  E+QF  N
Sbjct:   43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVN 164          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  249 MWLFSRKGPSGFSASSTAEEVTQGIDGT--GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA----------KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATN 659
            +WL +R+    FS      +   G  G   G T ++TGA+SG+G  TA  L   G  VIM  R+ A  ++    + +E+  A          ++   ELD++SL SVR F  E   +   L++LINNAG+   P+  ++D  E+QF  N
Sbjct:   18 LWLAARR----FSGPRNQRQQGGGDPGLMHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVN 162          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: OXIR_STRAT (Probable oxidoreductase OS=Streptomyces antibioticus PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  321 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF-MLSKDNIELQFATN 659
            +D TG  A+VTG +SG+G ET R LA  G  V +A R   + + + + +     + +V A  LD+S  ASV  FA  +     PL+IL+ NAGIMA P   L+ +  E+Q ATN
Sbjct:    1 MDLTGRRAVVTGGASGLGAETVRALAAAGAEVTVATRRPLSAEPLVQELAAAGGAGRVTAEALDLSDPASVESFARAWRG---PLDILVANAGIMALPTRTLAPNGWEMQLATN 111          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: DHR13_HUMAN (Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI 602
            G TA+VTGA+SGIG  TA  LA RG  V++A R+   G+     + +E  + +V  M LD++SLASVR FA+ + S    L+ILI+NAGI
Sbjct:   36 GRTAVVTGANSGIGKMTALELARRGARVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI 125          
The following BLAST results are available for this feature:
BLAST of FC869038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
DHRSX_HUMAN7.203e-1637.10Dehydrogenase/reductase SDR family member on chrom... [more]
RDH13_MOUSE1.605e-1538.64Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH12_BOVIN2.096e-1538.53Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
RDH11_MOUSE6.098e-1532.59Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH12_HUMAN1.040e-1437.61Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH11_HUMAN1.040e-1432.59Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH14_HUMAN3.346e-1336.07Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
RDH14_MOUSE5.707e-1332.89Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 ... [more]
OXIR_STRAT1.271e-1240.35Probable oxidoreductase OS=Streptomyces antibiotic... [more]
DHR13_HUMAN2.833e-1247.78Dehydrogenase/reductase SDR family member 13 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC31007H02EF AbioticL1 Citrus clementina cDNA clone C31007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869038 ID=FC869038; Name=FC869038; organism=Citrus clementina; type=EST; length=736bp
GAAGTGACCCAACTTTCGAAGGCAACAACGCGATACGAATCTAGCAAGAT
TGCAGTCACACAACCTTCACCGGTCGGTGAATGACTACACGGCTTCCTAA
ACGGCTAATACGTATCAACTGTCGTTGCCCTTCATTCTTGATCGTAACTC
ATAAGAAGCCCGTAACGCTGTAACAACCGTAACTTTGTTTGTGCGAGCTA
AAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAACAT
GTGGCTGTTTAGCAGAAAAGGGCCATCTGGGTTCTCGGCTTCCTCAACAG
CTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCACAGCCATTGTC
ACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTGTCCTTGCCTT
GCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCTGCTGGTAAAG
ATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAAAGTTGATGCC
ATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAATTTGCTTCAGA
ATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAACAATGCAGGAA
TAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGAACTACAGTTT
GCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTTTATTGGACAC
CATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGG
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