FC869038

Overview
NameFC869038
Unique NameFC869038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: DHR13_BOVIN (Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI 602
            G TA+VTGA+SGIG  TA  LA RG  V++A R+   G+     + +E  + +V  M LD++SLASVR FA+ + S    L+ILI+NAGI
Sbjct:   36 GRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI 125          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: OXIR_STRLI (Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  321 IDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSA---KVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPF-MLSKDNIELQFATN 659
            +D TG  A+VTG +SG+G ET R LA  G  V +A R+  +     E +V+E  +A   +V A  LD+S +ASV  FA  +     PL+IL+ NAGIMA P   L+    E+Q ATN
Sbjct:    1 MDLTGRRAVVTGGASGLGAETVRALAAAGAEVTIATRHPQSA----EPLVQEAAAAGAGRVHAEALDLSDVASVDSFARAWRG---PLDILVANAGIMALPTRTLTPYGWEMQLATN 110          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 45/135 (33.33%), Postives = 65/135 (48.15%), Query Frame = 3
Query:  339 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSR 731
            TAI+TGASSG+G   A+ LA  G  HV+MA R+    +   + +   +P+     + LD+SSL SVR+F   + + GR L+ L+ NA +    A     + D  EL   TN            D +K    K  R
Sbjct:   87 TAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKV--GMPAGSYSILHLDLSSLESVRQFVQNFKASGRRLDALVCNAAVYLPTAKEPRFTADGFELSVGTNHLGHFLLTNLLLDDLKNAPNKQPR 219          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  339 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATN 659
            T I+TGASSG+G   A+ L  +G HVIMA RN+   + V + +    P      ++LD+  L SVR+F +++   GRPL  L+ NA +   +    + S D+ EL  ATN
Sbjct:    8 TVIITGASSGVGLYGAKALIDKGWHVIMACRNLDKTQKVADEL--GFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATN 115          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  339 TAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATN 659
            T ++TGASSG+G   A+ L  RG HV+MA RN+       +++     S  +  M +D+ SL SVRKF +++   G+ L+ L+ NA +   +    M S +  EL  ATN
Sbjct:    8 TVVITGASSGVGLYAAKALVKRGWHVVMACRNLEKADSAAKSLGMSPDSYTL--MHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVHMPLLKEPMRSPEGYELSVATN 115          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  285 SASSTAEEVTQGIDGTGL----TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSR 731
            +A++++  VT+ +DG         +VTGASSG+G  TA+ LA  G  +VIMA R+    +   +++   +P      M LD++SL SVR+F   +     PL++L+ NA +    A     S +  EL  ATN            D +KK+   S R
Sbjct:   68 TAATSSPTVTKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSV--GMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKR 222          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: DHR13_MOUSE (Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  333 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI 602
            G T +VTGA+SGIG  TA  LA RG  V++A R+   G+     + +E  + +V  M LD++SLASV+ FA+ + S    L++LI+NAGI
Sbjct:   36 GRTVVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGI 125          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  339 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSR 731
            + ++TGASSG+G  TA+ LA  G  HVIMA R+    K  R A    I       M LD++SL SVR+F   +   GRPL++L+ NA +    A     + +  EL   TN            + + K++  S R
Sbjct:   88 SVVITGASSGLGLATAKALAETGKWHVIMACRDFL--KAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKR 220          
BLAST of FC869038 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 48/135 (35.56%), Postives = 65/135 (48.15%), Query Frame = 3
Query:  339 TAIVTGASSGIGTETARVLALRGV-HVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGI---MASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSR 731
            + I+TGASSG+G  TA+ LA  G  HVIMA R+    K  R A    +P      M LD++SL SVR+F   +    RPL++L+ NA +    A     + D  EL   TN            D + K+   S R
Sbjct:   87 SVIITGASSGLGLATAKALAETGKWHVIMACRDFL--KAERAAKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKR 219          
The following BLAST results are available for this feature:
BLAST of FC869038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
DHR13_BOVIN3.699e-1247.78Dehydrogenase/reductase SDR family member 13 OS=Bo... [more]
OXIR_STRLI4.832e-1242.74Probable oxidoreductase OS=Streptomyces lividans P... [more]
POR_CHLRE8.241e-1233.33Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_SYNY31.406e-1138.18Light-dependent protochlorophyllide reductase OS=S... [more]
POR_PLEBO1.836e-1136.36Light-dependent protochlorophyllide reductase OS=P... [more]
PORB_ARATH1.836e-1131.85Protochlorophyllide reductase B, chloroplastic OS=... [more]
DHR13_MOUSE4.090e-1144.44Dehydrogenase/reductase SDR family member 13 OS=Mu... [more]
PORA_CUCSA6.977e-1134.07Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
POR_DAUCA9.112e-1135.56Protochlorophyllide reductase, chloroplastic OS=Da... [more]

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Properties
Property NameValue
Genbank descriptionC31007H02EF AbioticL1 Citrus clementina cDNA clone C31007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869038 ID=FC869038; Name=FC869038; organism=Citrus clementina; type=EST; length=736bp
GAAGTGACCCAACTTTCGAAGGCAACAACGCGATACGAATCTAGCAAGAT
TGCAGTCACACAACCTTCACCGGTCGGTGAATGACTACACGGCTTCCTAA
ACGGCTAATACGTATCAACTGTCGTTGCCCTTCATTCTTGATCGTAACTC
ATAAGAAGCCCGTAACGCTGTAACAACCGTAACTTTGTTTGTGCGAGCTA
AAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAACAT
GTGGCTGTTTAGCAGAAAAGGGCCATCTGGGTTCTCGGCTTCCTCAACAG
CTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCACAGCCATTGTC
ACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTGTCCTTGCCTT
GCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCTGCTGGTAAAG
ATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAAAGTTGATGCC
ATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAATTTGCTTCAGA
ATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAACAATGCAGGAA
TAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGAACTACAGTTT
GCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTTTATTGGACAC
CATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGG
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