FC869055

Overview
NameFC869055
Unique NameFC869055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.372e-16
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  234 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTA--GELEY------FTDTTTLFIVEMIFIRWAEGRR 536
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L     +    W     G+  Y      + +  T+  +E + I +AE +R
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 3
Query:  234 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPW--YTAGELEYFTDTT------TLFIVEMIFIRWAEGRR 536
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE L     +    W     G+  Y           T+  +E + I + E +R
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  177 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL + G+      W+ AG
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 143          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  177 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAGELEYFTD 479
            A  + VS S+     +R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG  + F+D
Sbjct:   39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGS-QIFSD 141          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.939e-15
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  222 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAG 134          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.939e-15
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 134          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  252 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 134          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG 133          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  219 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  186 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGG 136          
The following BLAST results are available for this feature:
BLAST of FC869055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB121_HORVU5.372e-1641.28Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC9.162e-1639.45Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2B_PINSY3.482e-1542.57Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_WHEAT3.482e-1541.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU5.939e-1549.40Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_MAIZE5.939e-1545.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL7.756e-1550.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_SILPR1.013e-1445.78Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI1.728e-1446.99Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_NICPL2.257e-1443.16Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31008A07EF AbioticL1 Citrus clementina cDNA clone C31008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869055 ID=FC869055; Name=FC869055; organism=Citrus clementina; type=EST; length=553bp
GTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAATTTGCCCTCCGTT
TGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAG
TAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGC
TGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTG
AGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCAC
TCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATC
CTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCA
GAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCAT
TCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCACCCTGGTACA
CAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTT
GAGATGATATTCATACGCTGGGCAGAGGGAAGACGGTGGGCCGACATTAT
AAA
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