FC869055
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.372e-16 Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3 Query: 234 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTA--GELEY------FTDTTTLFIVEMIFIRWAEGRR 536 WFPG P LDGS PGDFGFDPLGL + PE +SEI HCRWAML G+ +PE L + W G+ Y + + T+ +E + I +AE +R Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR 156
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16 Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 3 Query: 234 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPW--YTAGELEYFTDTT------TLFIVEMIFIRWAEGRR 536 W PG P +LDGS PGDFGFD LGLG P L +SE++HCRWAML GI +PE L + W G+ Y T+ +E + I + E +R Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15 Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 3 Query: 177 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 A T+ ++ SA+ + P+R L+ F G PP +L G PGD+G+D GL +DPE N + E++HCRWAMLGA G PELL + G+ W+ AG Sbjct: 44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 143
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15 Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 177 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAGELEYFTD 479 A + VS S+ +R L+ PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG + F+D Sbjct: 39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGS-QIFSD 141
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.939e-15 Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 222 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 +RPL+ F GS PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL K G+ W+ AG Sbjct: 53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAG 134
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.939e-15 Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 3 Query: 219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 P+R L+ PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 134
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15 Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 3 Query: 252 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 134
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 3 Query: 219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 P+RP + P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL K G+ W+ AG Sbjct: 51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG 133
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14 Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 3 Query: 219 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 P+RP + P S P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG Sbjct: 52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14 Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 3 Query: 186 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458 + VS S+ PNR + F G +P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ G Sbjct: 43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGG 136 The following BLAST results are available for this feature:
BLAST of FC869055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869055 ID=FC869055; Name=FC869055; organism=Citrus clementina; type=EST; length=553bpback to top |