FC869055

Overview
NameFC869055
Unique NameFC869055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  252 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 131          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  252 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG
Sbjct:   61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 130          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  252 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 134          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  237 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            F G TP  +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL K G+      W+ AG
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG 137          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  219 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPP--WYTAGELEYFTDTTTLF 494
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYF 163          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  255 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAG 135          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 132          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 132          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  219 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG 135          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  255 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPPWYTAG 458
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG 133          
The following BLAST results are available for this feature:
BLAST of FC869055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_MAIZE8.576e-1448.57Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ1.120e-1348.57Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.120e-1348.57Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_PHYPA1.463e-1349.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_ARATH1.463e-1341.41Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB24_PETSP1.463e-1347.83Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_ORYSJ1.910e-1343.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.910e-1343.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.910e-1343.37Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI1.910e-1349.28Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC31008A07EF AbioticL1 Citrus clementina cDNA clone C31008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869055 ID=FC869055; Name=FC869055; organism=Citrus clementina; type=EST; length=553bp
GTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAATTTGCCCTCCGTT
TGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAG
TAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGC
TGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTG
AGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCAC
TCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATC
CTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCA
GAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCAT
TCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCACCCTGGTACA
CAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTT
GAGATGATATTCATACGCTGGGCAGAGGGAAGACGGTGGGCCGACATTAT
AAA
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