FC869060

Overview
NameFC869060
Unique NameFC869060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.085e-66
Identity = 126/179 (70.39%), Postives = 143/179 (79.89%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIRKAQRAEG ATILAI TA P N V QA YPD+YF ITNSEH T            SMI+ R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKTELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.085e-66
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIR+AQRAEG ATI+AI TA P NCV Q+ YPD+YF ITNSEH              SMI++R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPSNCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS2_HORVU (Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.085e-66
Identity = 122/178 (68.54%), Postives = 141/178 (79.21%), Query Frame = 2
Query:   68 VTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            V  +E+R AQRAEGLAT+LAI TA P NCV QA YPDYYF +T SEH+             SMIRKRHM LTEEIL  NP +C HM TSLDAR  I+LVEVPKLG+ AA KAIKEWGQP S ITHL+FCT++GVDMPGADYQLT+L+GL+P VKR+M+YQQGC+ GAT+LRLAKD+AE
Sbjct:    4 VRLKEVRMAQRAEGLATVLAIGTAVPANCVYQATYPDYYFRVTKSEHLADLKEKFQRMCDKSMIRKRHMHLTEEILIKNPKICAHMETSLDARHAIALVEVPKLGQGAAEKAIKEWGQPLSKITHLVFCTTSGVDMPGADYQLTKLLGLSPTVKRLMMYQQGCFGGATVLRLAKDIAE 181          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.029e-66
Identity = 122/179 (68.16%), Postives = 143/179 (79.89%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            M   E  RKAQRA+G ATILAI TATPPN V Q+ YPDYYF ITNSEHMT            S I+KR+M LTEEIL  NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITH+IFCT++GVDMPGADYQ+T+L+GL P VKR+M+YQQGC+AG T+LR+AKDLAE
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSGIKKRYMYLTEEILNENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQMTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAE 184          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.261e-66
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIR AQRAEG ATILAI TA P NCV Q+ YPD+YF ITNSEH T            SMI++R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLI CT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.172e-65
Identity = 125/179 (69.83%), Postives = 142/179 (79.33%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIRKAQRAEG ATILAI TA P N V QA YPD+YF ITNSEH              SMI+ R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.172e-65
Identity = 125/179 (69.83%), Postives = 142/179 (79.33%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIRKAQRAEG ATILAI TA P N V QA YPD+YF ITNSEH              SMI+ R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.611e-65
Identity = 124/179 (69.27%), Postives = 142/179 (79.33%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIR+AQRAEG ATILAI TA P N V QA YPD+YF ITNSEH              SMI+ R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHSY_ONOVI (Chalcone synthase OS=Onobrychis viciifolia GN=CHS PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.454e-65
Identity = 121/179 (67.60%), Postives = 140/179 (78.21%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV   E R+ QRAEG  TI AI+TA PPNCV Q+ YPD+YF ITNSEH              SMI++R+M LTEEILK NPN+C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLI CT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVDVAESRRTQRAEGPRTIFAIATANPPNCVEQSTYPDFYFKITNSEHKVELKEKFQRMDDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMFVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPHVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.454e-65
Identity = 124/179 (69.27%), Postives = 142/179 (79.33%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MV+  EIR+AQRAEG ATILAI TA P N V QA YPD+YF ITNSEH              SMI+ R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179          
The following BLAST results are available for this feature:
BLAST of FC869060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS6_TRISU3.085e-6670.39Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]
CHS3_MEDSA3.085e-6668.72Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHS2_HORVU3.085e-6668.54Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=... [more]
CHSY_PINST4.029e-6668.16Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHS8_MEDSA5.261e-6669.27Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS4_TRISU1.172e-6569.83Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS2_TRISU1.172e-6569.83Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS3_TRISU2.611e-6569.27Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHSY_ONOVI4.454e-6567.60Chalcone synthase OS=Onobrychis viciifolia GN=CHS ... [more]
CHS5_TRISU4.454e-6569.27Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC31008A12EF AbioticL1 Citrus clementina cDNA clone C31008A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869060 ID=FC869060; Name=FC869060; organism=Citrus clementina; type=EST; length=601bp
AAGCGCAAACTTATCAATTAACTAAGATATAAGTACTGTTTTGGAAGCAA
TCTGACGATCAGAGATGGTAACAACGGAGGAGATTAGAAAGGCTCAGCGA
GCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAACGCCGCCCAA
TTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGATCACCAACA
GCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTGTGTGAGAAG
TCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGATTTTAAAAGC
AAACCCTAATATGTGCTTACACATGGGGACATCACTCGATGCGCGCCAGG
ACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCGGCAACCAAA
GCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCATCTCATTTT
CTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATCAGCTCACAA
GACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATATATCAACAA
GGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGATCTGGCTGA
A
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