FC869081

Overview
NameFC869081
Unique NameFC869081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 428.713 bits (1101), Expect = 1.509e-119
Identity = 206/238 (86.55%), Postives = 219/238 (92.02%), Query Frame = 1
Query:    1 QNKKDRWIGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            Q   DRW GL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:   69 QTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 306          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 3.362e-119
Identity = 208/238 (87.39%), Postives = 219/238 (92.02%), Query Frame = 1
Query:    1 QNKKDRWIGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            Q + DRW GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:   69 QTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEK 306          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.391e-119
Identity = 205/238 (86.13%), Postives = 221/238 (92.86%), Query Frame = 1
Query:    1 QNKKDRWIGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            + K+DRW GL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:   64 ETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 301          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 426.787 bits (1096), Expect = 5.735e-119
Identity = 212/238 (89.08%), Postives = 218/238 (91.60%), Query Frame = 1
Query:    1 QNKKDRWIGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            Q  KDRW GLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:   69 QTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEK 304          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 398.667 bits (1023), Expect = 1.672e-110
Identity = 193/238 (81.09%), Postives = 210/238 (88.24%), Query Frame = 1
Query:    1 QNKKDRWIGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            +   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:   63 EKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEK 300          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 6.821e-96
Identity = 176/236 (74.58%), Postives = 194/236 (82.20%), Query Frame = 1
Query:   16 RW--IGLAYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            RW  I    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK
Sbjct:   42 RWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEK 275          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.689e-67
Identity = 126/172 (73.26%), Postives = 144/172 (83.72%), Query Frame = 1
Query:  202 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEK 175          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.689e-67
Identity = 126/172 (73.26%), Postives = 144/172 (83.72%), Query Frame = 1
Query:  202 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 714
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEK 175          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 109/226 (48.23%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   25 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 702
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAG                                         RVPIIVTGNDFSTLYAPLIR G
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAG-----------------------------------------RVPIIVTGNDFSTLYAPLIRIG 116          
BLAST of FC869081 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  349 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 531
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of FC869081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA2_TOBAC1.509e-11986.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.362e-11987.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.391e-11986.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.735e-11989.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.672e-11081.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE6.821e-9674.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP8.689e-6773.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC8.689e-6773.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.913e-3848.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.102e-1263.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC31008C11EF AbioticL1 Citrus clementina cDNA clone C31008C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869081 ID=FC869081; Name=FC869081; organism=Citrus clementina; type=EST; length=722bp
CAGAACAAGAAGGACAGATGGATCGGCCTTGCCTACGACGAATCTGATGA
CCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAG
CCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTAC
ATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCT
CTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGA
ACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGG
GGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAA
GATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCA
ATGCTGGAGAACCTGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCT
GACATTATCAAGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGA
TGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACC
AAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTC
CAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCAT
AGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATG
GTCGTATGGAGAAATCTACTGG
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