FC869094

Overview
NameFC869094
Unique NameFC869094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  270 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYA 641
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK ES  K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYA
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYA 158          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.134e-24
Identity = 61/132 (46.21%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  252 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYA 641
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYA
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYA 202          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.992e-17
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  342 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 638
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDF 129          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.992e-17
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  342 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 638
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDF 129          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  351 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 638
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDF 131          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  351 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 638
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDF 132          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  342 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 638
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDF 132          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  327 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDY 638
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDF 131          
BLAST of FC869094 vs. ExPASy Swiss-Prot
Match: PSBO_BRARA (Oxygen-evolving enhancer protein 1, chloroplastic (Fragment) OS=Brassica rapa GN=PSBO PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 3
Query:  306 EGVPKRLTYDEIQSKTYMEVKGTGTANQCPT 398
            EG PKRLTYDEIQSKTYMEVKGTGTANQCPT
Sbjct:    1 EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31          
The following BLAST results are available for this feature:
BLAST of FC869094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE3.768e-2849.60Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.134e-2446.21Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB2.992e-1743.56Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN2.992e-1743.56Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP1.257e-1542.00Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY31.537e-1340.82Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA54.471e-1340.59Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE71.699e-1236.79Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_BRARA9.324e-1196.77Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31008E01EF AbioticL1 Citrus clementina cDNA clone C31008E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869094 ID=FC869094; Name=FC869094; organism=Citrus clementina; type=EST; length=643bp
AAGATAAAGGGTTCCTAGCAAGTAACCCACGAGTGGTAGGGAGCAAGATG
GCAGCCTCGTTACAAGCCGCAGCTACACTGATGCAACCCACCAAGGTGGG
TGTGGTACCCGCTCGCAGCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCG
TTTCGAAGGCTTTTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCACT
TTGAATAATGACTTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAA
GATCGCTGGCTTTGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAA
GTGCTGAAGGTGTTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAG
ACATACATGGAAGTAAAGGGAACCGGAACTGCTAACCAGTGCCCAACCAT
TGATGGCGGAGTTGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTA
AGAAGTTCTGCCTAGAACCAACTTCCTTCACTGTCAAGGCTGAGAGTGTC
AACAAGAATGCCCCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCT
TACCTACACCCTTGACGAGATTGAGGGACCTTTTGAAGTGTCCCCCGATG
GCACCATTAAGTTTGTGGAGAAGGATGGAATTGACTATGCTGC
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