FC869193

Overview
NameFC869193
Unique NameFC869193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.764e-94
Identity = 172/212 (81.13%), Postives = 183/212 (86.32%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAVN+  S   L    R++MRKTA+K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAI ACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPE      V+  +  RLAM
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAM 221          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.372e-93
Identity = 168/193 (87.05%), Postives = 174/193 (90.16%), Query Frame = 3
Query:  135 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAI ACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAM 218          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.056e-93
Identity = 170/209 (81.34%), Postives = 181/209 (86.60%), Query Frame = 3
Query:   87 GKAVNLAPSGNELGNGGRISMRKTAS--KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            GK + L PS  ELG   R +MRK+A+  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI A QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAM 225          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.056e-93
Identity = 167/210 (79.52%), Postives = 180/210 (85.71%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI A QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPE      V+  +  RLAM
Sbjct:   13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAM 222          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.517e-92
Identity = 171/211 (81.04%), Postives = 182/211 (86.26%), Query Frame = 3
Query:   87 GKAVNLA--PSGNELGNGGRISMRKTAS--KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            GK V  +  PS  ELG G R +MRK+A+  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAI A QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPE      V+  +  RLAM
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAM 224          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.981e-92
Identity = 168/209 (80.38%), Postives = 177/209 (84.69%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV    S +E+    R+SMRKTA+     GSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAI ACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD E      V+  +  RLAM
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAM 220          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.378e-92
Identity = 168/217 (77.42%), Postives = 182/217 (83.87%), Query Frame = 3
Query:   87 GKAVNLAPSGNELGNGG-------RISMRKTASKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAI ACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPE      V+  +  RLAM
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAM 230          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.378e-92
Identity = 167/211 (79.15%), Postives = 182/211 (86.26%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAV   PS   +G+  R++MRKTA+K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAI ACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+      V+  +  RLAM
Sbjct:   13 FAGKAVKNLPSSALIGDA-RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAM 222          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.735e-91
Identity = 166/211 (78.67%), Postives = 181/211 (85.78%), Query Frame = 3
Query:   81 FVGKAVNLAPSGNELGNGGRISMRKTASKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAI A QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPE      V+  +  RLAM
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAM 223          
BLAST of FC869193 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.419e-90
Identity = 169/205 (82.44%), Postives = 177/205 (86.34%), Query Frame = 3
Query:  105 APS-GNELGNGGRISMRKTASK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAI*ACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPELLLSSSVRN-QEWRLAM 704
            APS  + L    RI+MRKTA+K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAI A QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPE      V+  +  RLAM
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAM 221          
The following BLAST results are available for this feature:
BLAST of FC869193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB29_MAIZE2.764e-9481.13Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_MAIZE1.372e-9387.05Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PEA3.056e-9381.34Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_SINAL3.056e-9379.52Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA1.517e-9281.04Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_HORVU1.981e-9280.38Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY3.378e-9277.42Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_WHEAT3.378e-9279.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH3.735e-9178.67Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_ORYSJ1.419e-9082.44Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31009E07EF AbioticL1 Citrus clementina cDNA clone C31009E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869193 ID=FC869193; Name=FC869193; organism=Citrus clementina; type=EST; length=704bp
CAGCTGCTCTTGTCTGCACAACTTCGGCTTCTGAATTAAATTCCGCAATG
GCCACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAA
CCTTGCCCCTTCAGGCAATGAGCTGGGCAATGGTGGCCGCATCTCCATGC
GTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCG
GACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTT
GACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAG
CTGACCCAGAAACCTTTGCCAAGAACCGCGAACTCGAAGTCATCCACTGC
AGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGC
CCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCAGGAGCTC
AGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATC
CACGCCCAGAGCATCTTGGCCATCTGAGCTTGCCAGGTGGTATTGATGGG
AGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGCTTTTGCTGAGCTCAAGTGTAAGGAATCAAGAATGGAGGTTGGC
TATG
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