FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 6.560e-67
Identity = 113/163 (69.33%), Postives = 133/163 (81.60%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+NV+ G+GPTAGAA+ASH DVDK++FTG  + G ++Q  A KSNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E +Y EFVE++
Sbjct:  180 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERS 342

HSP 2 Score: 32.7278 bits (73), Expect = 6.560e-67
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  530 SGVEQGPQIDPEQFEKVLKYIR 595
            S  EQGPQ+D  QF+KVL YI+
Sbjct:  357 SRTEQGPQVDETQFKKVLGYIK 378

HSP 3 Score: 22.7126 bits (47), Expect = 6.560e-67
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3 
Query:  483 KSKARAMRRIVGDPF 527
            +S ARA  R+VG+PF
Sbjct:  341 RSVARAKSRVVGNPF 355
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 8.758e-67
Identity = 108/163 (66.26%), Postives = 135/163 (82.82%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTAL++  L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG  + GK+++E A KSNLK V+LELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++
Sbjct:  161 GVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRS 323

HSP 2 Score: 33.8834 bits (76), Expect = 8.758e-67
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L  GV QGPQID EQ+EK+L  I
Sbjct:  336 LTPGVSQGPQIDKEQYEKILDLI 358
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 8.758e-67
Identity = 108/163 (66.26%), Postives = 135/163 (82.82%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+F WK+ PAL+CGNT+V+K AEQTPLTAL++  L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG  + GK+++E A KSNLK V+LELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++
Sbjct:  161 GVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRS 323

HSP 2 Score: 33.8834 bits (76), Expect = 8.758e-67
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L  GV QGPQID EQ+EK+L  I
Sbjct:  336 LTPGVSQGPQIDKEQYEKILDLI 358
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.112e-66
Identity = 113/163 (69.33%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH  VDK++FTG  + G ++Q  A  SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCCCAGSRT+V E VYDEFVE++
Sbjct:  179 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEGVDKVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQENVYDEFVERS 341

HSP 2 Score: 32.3426 bits (72), Expect = 1.112e-66
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  530 SGVEQGPQIDPEQFEKVLKYIR 595
            S  EQGPQ+D  QF+K+L YI+
Sbjct:  356 SRTEQGPQVDETQFKKILGYIK 377

HSP 3 Score: 22.7126 bits (47), Expect = 1.112e-66
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3 
Query:  483 KSKARAMRRIVGDPF 527
            +S ARA  R+VG+PF
Sbjct:  340 RSVARAKSRVVGNPF 354
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 243.432 bits (620), Expect = 1.942e-66
Identity = 110/163 (67.48%), Postives = 136/163 (83.44%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFP+L+F WK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAGAA++SHMDVDK++FTG    GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E VYDEFV+++
Sbjct:  161 GVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEFVKRS 323

HSP 2 Score: 30.8018 bits (68), Expect = 1.942e-66
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2 
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L  G+ QGPQID EQ +K+L  I
Sbjct:  336 LTPGINQGPQIDKEQHDKILDLI 358
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 5.615e-66
Identity = 107/163 (65.64%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPL++  WK+ PAL+CGNT+V+K AEQTPLTAL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+DK++FTG  + GK+++E A KSNLK VTLELGGKSP I+  DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++
Sbjct:  161 GVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRS 323

HSP 2 Score: 32.3426 bits (72), Expect = 5.615e-66
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L  GV QGPQID EQ++K+L  I
Sbjct:  336 LTPGVTQGPQIDKEQYDKILDLI 358
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 7.320e-66
Identity = 109/163 (66.87%), Postives = 137/163 (84.05%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR +V E +Y+EFV+++
Sbjct:  178 GVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRS 340

HSP 2 Score: 29.261 bits (64), Expect = 7.320e-66
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2 
Query:  539 EQGPQIDPEQFEKVLKYIR 595
            EQGPQID +Q+ KVL+ I+
Sbjct:  358 EQGPQIDKKQYNKVLELIQ 376
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 9.545e-66
Identity = 109/163 (66.87%), Postives = 137/163 (84.05%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR +V E +Y+EFV+++
Sbjct:  178 GVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRS 340

HSP 2 Score: 28.8758 bits (63), Expect = 9.545e-66
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 2 
Query:  539 EQGPQIDPEQFEKVLKYIR 595
            EQGPQID +Q+ K+L+ I+
Sbjct:  358 EQGPQIDKKQYNKILELIQ 376
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.624e-65
Identity = 107/163 (65.64%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPL++  WK+ PAL+CGNT+V+K AEQTPLTAL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+DK++FTG  + GK+++E A KSNLK VTLELGGKSP I+  DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++
Sbjct:  161 GVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRS 323

HSP 2 Score: 30.8018 bits (68), Expect = 1.624e-65
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2 
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L  G  QGPQID EQ++K+L  I
Sbjct:  336 LTPGATQGPQIDKEQYDKILDLI 358
[Close]
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.761e-65
Identity = 107/163 (65.64%), Postives = 135/163 (82.82%), Query Frame = 1 
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPL++  WK+ PAL+CGNT+++K AEQTPLTAL+VA L  EAG PPGV+N+V GYGPTAGAA++SHMD+DK++FTG  + GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +FY+QGQCC A SR +V E +YDEFV ++
Sbjct:  156 GVCGQIIPWNFPLVMLIWKIGPALSCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRS 318

HSP 2 Score: 28.8758 bits (63), Expect = 2.761e-65
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2 
Query:  536 VEQGPQIDPEQFEKVLKYI 592
            V QGPQID EQ+ K+L  I
Sbjct:  335 VNQGPQIDKEQYNKILDLI 353
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ALDH2_BOVIN6.560e-6769.33Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1A1_SHEEP8.758e-6766.26Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN8.758e-6766.26Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
ALDH2_MOUSE1.112e-6669.33Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
AL1A1_MOUSE1.942e-6667.48Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_HUMAN5.615e-6665.64Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A2_MOUSE7.320e-6666.87Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_RAT9.545e-6666.87Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A1_MACFA1.624e-6565.64Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_RABIT2.761e-6565.64Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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