FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BURPP (Betaine aldehyde dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.269e-40
Identity = 81/173 (46.82%), Postives = 117/173 (67.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEF----VEKARHVQ*G 507
            GV   I  WN+P+ +  WK APAL  GN ++ K +E TPL+AL +A++F EAG+P GV NVV G G   GA LA+H D++K+SFTG  +TGK V  +A  S+LK VT+ELGGKSP ++FDDA++++A ++A  A F++ GQ C  G+R +V   V D F    +E+ + ++ G
Sbjct:  144 GVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEITPLSALKLAEIFTEAGVPAGVFNVVQGDG-RVGAMLAAHPDIEKISFTGGVETGKKVMSMAGASSLKEVTMELGGKSPLLVFDDANLERAADIATSANFFSSGQVCTNGTRVFVQRGVLDRFEALVLERVKRIRVG 315          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: DHA2_RALEH (Acetaldehyde dehydrogenase 2 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoD PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.080e-39
Identity = 88/170 (51.76%), Postives = 117/170 (68.82%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIF------DDADVDQAVE-LAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+ TWK+APAL  GN +VLK AEQTP + L + ++  +  LPPGV+NV++G+G  AG  LAS   + K++FTG   TG+++ + A++ NL PVTLELGGKSP I F      DDA  D+A+E  A FAL  NQG+ C   SR  + E +YD F+E+A
Sbjct:  156 GVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPASILVLMEVIGDL-LPPGVVNVINGFGLEAGKPLASSPRISKVAFTGETTTGRLIMQYASQ-NLIPVTLELGGKSPNIFFEDVLAADDAFFDKALEGFAMFAL--NQGEVCTCPSRALIQESIYDRFMERA 321          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAHJ (Putative aldehyde dehydrogenase aldA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=aldA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.292e-39
Identity = 82/164 (50.00%), Postives = 112/164 (68.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            GV G +V WNFP+LL +WK+APAL  GNTIV++ +  TPL+ + +AK+F E  LP GV+NV++G G  +G A+ +H  V+KLSFTG  D G  V +  A+  + P TLELGGKS  IIFDDA++DQ VE A   + +NQG+ C AGSR  V   +YD+ + K +
Sbjct:  151 GVVGAVVAWNFPILLASWKLAPALAAGNTIVIQPSSSTPLSLIELAKIFQEV-LPKGVVNVLTGKGSESGDAIFNHEGVNKLSFTGSTDVGYGVAKAGAE-RIVPTTLELGGKSANIIFDDANLDQVVEGAQLGILFNQGEVCSAGSRLLVQSSIYDKVMPKLK 312          

HSP 2 Score: 22.3274 bits (46), Expect = 1.292e-39
Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  536 VEQGPQIDPEQFEKVLKYIR 595
            V+   Q  PEQ EK+  Y++
Sbjct:  328 VKMSAQTGPEQLEKIESYVK 347          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL8A1_DANRE (Aldehyde dehydrogenase family 8 member A1 OS=Danio rerio GN=aldh8a1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.410e-39
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GVAG I PWN PL L TWK+APA+  GNT+V K +E T +TA  + +L  EAG PPGV+N+V G GP AG AL SH DV  +SFTG   T +++ E +A  + K ++LELGGK+P IIF DAD++Q +     + F NQG+ C   SR +V   VY EF+ +
Sbjct:  146 GVAGLISPWNLPLYLLTWKIAPAVATGNTVVAKPSEMTSVTAWMMCQLLEEAGFPPGVVNIVFGTGPRAGDALVSHPDVPLISFTGSTATARLITERSA-PHCKKLSLELGGKNPAIIFADADMEQCISTTVRSSFSNQGEICLCTSRIFVERSVYPEFLTR 306          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL9A1_HUMAN (4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.406e-39
Identity = 81/162 (50.00%), Postives = 108/162 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P  + +WK APAL CGN +V K +  TP++AL +A+++ EAG+PPG+ NVV G G   G  L  H DV K+SFTG   TG  + E++AK  +KPVTLELGGKSP IIF D D++ AV+ A  A F  QGQ CC G+R +V + + D+F E+
Sbjct:  148 GVCVGIGAWNYPFQIASWKSAPALACGNAMVFKPSPFTPVSALLLAEIYSEAGVPPGLFNVVQG-GAATGQFLCQHPDVAKVSFTGSVPTGMKIMEMSAK-GIKPVTLELGGKSPLIIFSDCDMNNAVKGALMANFLTQGQVCCNGTRVFVQKEILDKFTEE 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_ERWCT (Betaine aldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=betB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.142e-39
Identity = 80/162 (49.38%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E T LTAL +A+++ EAGLP GV NV++G G + G AL +H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIFDDAD+D+A ++A  A F++ GQ C  G+R +V + +  +F EK
Sbjct:  144 GVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEIYTEAGLPAGVFNVLTGTGKSVGQALTTHPGIAKVSFTGGIASGKTVMANAAGSTLKDVTMELGGKSPLIIFDDADLDKAADIAMMANFFSSGQVCTNGTRVFVPKALQAQFEEK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL9A1_PONAB (4-trimethylaminobutyraldehyde dehydrogenase OS=Pongo abelii GN=ALDH9A1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.142e-39
Identity = 81/162 (50.00%), Postives = 108/162 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P  + +WK APAL CGN +V K +  TP++AL +A+++ EAG+PPG+ NVV G G   G  L  H DV K+SFTG   TG  + E++AK  +KPVTLELGGKSP IIF D D++ AV+ A  A F  QGQ CC G+R +V + + D+F E+
Sbjct:  148 GVCVGIGAWNYPFQITSWKSAPALACGNAMVFKPSPFTPVSALLLAEIYTEAGVPPGLFNVVQG-GAATGQFLCQHPDVAKVSFTGSVPTGMKIMEMSAK-GIKPVTLELGGKSPLIIFSDCDMNNAVKGALMANFLTQGQVCCNGTRVFVQKEILDKFTEE 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_MARMS (Betaine aldehyde dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=betB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.104e-39
Identity = 82/177 (46.33%), Postives = 112/177 (63.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            G+   I  WN+P+ +  WK  PAL  GN ++ K +E+TPLTAL +A++F EAGLP GV NV+ G   T G  + +H D+DK+SFTG   TGK V   +A+S LK VT+ELGGKSP IIF D  VDQAV  A  A FY QG+ C  G+R +VH  + D F ++ +     +++  P +
Sbjct:  141 GICAGIGAWNYPIQIAMWKSGPALAAGNAMIFKPSEETPLTALKLAEIFTEAGLPDGVFNVIQGDART-GQLITNHPDIDKVSFTGEVGTGKKVMAASAQS-LKQVTMELGGKSPMIIFPDMPVDQAVSAAMLANFYTQGEVCTNGTRVFVHADMLDAFTKELKQRTEAMIIGDPMD 315          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_CHRSD (Betaine aldehyde dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.104e-39
Identity = 84/162 (51.85%), Postives = 102/162 (62.96%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I  WN+P+ +  WK APAL  GN IV K +E TPLTAL +A++F EAGLP GV NVV G G   GA L  H  + K+SFTG   TGK V   A  S LK VT+ELGGKSP I+F DAD+D+A + A  A FY+ GQ C  G+R +V     + F  K
Sbjct:  144 GVIGAIGAWNYPIQIACWKAAPALAAGNAIVFKPSEVTPLTALKLAEIFTEAGLPDGVFNVVQGDG-RVGAMLTEHEGIAKVSFTGEVGTGKKVMAAAGGSTLKDVTMELGGKSPLIVFADADLDRAADAAMMANFYSSGQICTNGTRVFVERSAKEAFEAK 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAES (Putative aldehyde dehydrogenase aldA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=aldA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.000e-39
Identity = 79/164 (48.17%), Postives = 109/164 (66.46%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            GV G +V WNFP+LL +WK+ PAL  GNT+V++ +  TPL+ + +AK+F E  LP GV+NV++G G  +G A+  H  VDKLSFTG  D G  V +  A+  + P TLELGGKS  IIFDDA+++Q +E     + +NQG+ C AGSR  V   +YDE + K +
Sbjct:  151 GVVGAVVAWNFPILLASWKLGPALAAGNTVVIQPSSSTPLSLIELAKIFQEV-LPKGVVNVLTGKGSESGDAIFHHEGVDKLSFTGSTDVGYGVAQAGAE-RIVPTTLELGGKSANIIFDDANLEQVIEGVQLGILFNQGEVCSAGSRLLVQSSIYDELLPKLK 312          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_BURPP8.269e-4046.82Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
DHA2_RALEH1.080e-3951.76Acetaldehyde dehydrogenase 2 OS=Ralstonia eutropha... [more]
ALDA_STAHJ1.292e-3950.00Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
AL8A1_DANRE1.410e-3950.00Aldehyde dehydrogenase family 8 member A1 OS=Danio... [more]
AL9A1_HUMAN2.406e-3950.004-trimethylaminobutyraldehyde dehydrogenase OS=Hom... [more]
BETB_ERWCT3.142e-3949.38Betaine aldehyde dehydrogenase OS=Erwinia carotovo... [more]
AL9A1_PONAB3.142e-3950.004-trimethylaminobutyraldehyde dehydrogenase OS=Pon... [more]
BETB_MARMS4.104e-3946.33Betaine aldehyde dehydrogenase OS=Marinomonas sp. ... [more]
BETB_CHRSD4.104e-3951.85Betaine aldehyde dehydrogenase OS=Chromohalobacter... [more]
ALDA_STAES7.000e-3948.17Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
back to top