FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_SHIF8 (Betaine aldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=betB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.841e-37
Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E TPLTAL +A+++ EAGLP GV NV+ G G   G  L  H  + K+SFTG   +GK V   +A S+LK VT+ELGGKSP I+FDDAD+D A ++A  A F++ GQ C  G+R +V  +    F +K
Sbjct:  144 GVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGGGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKCKAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.016e-37
Identity = 78/162 (48.15%), Postives = 104/162 (64.20%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E T LTAL +A+++ EAGLP GV NV++G G   G  L  H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIF DAD+D+A ++A  A FY+ GQ C  G+R +V + +   F +K
Sbjct:  144 GVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_ACIBS (Betaine aldehyde dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=betB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.016e-37
Identity = 80/163 (49.08%), Postives = 107/163 (65.64%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV   I  WN+P+ +  WK APAL  GN ++ K +E TPLTAL +A+++ EAGLP GV NVV G G   G  L  H  ++K+SFTG  +TGK V   AA S LK VT+ELGGKSP II +DAD+++A ++A  A F++ GQ C  G+R +V +    +F EKA
Sbjct:  144 GVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSETTPLTALKLAEIYTEAGLPDGVFNVVQGAGREIGQWLTEHPVIEKISFTGGVETGKKVMASAAGSTLKEVTMELGGKSPLIICEDADLNRAADIAVMANFFSSGQVCTNGTRVFVPKSRLADF-EKA 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_YERPP (Betaine aldehyde dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+PL +  WK APAL  GN ++ K +E T LTAL +A ++ EAGLP GV NV++G G   G  L  H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIF DAD+D+A ++A  A FY+ GQ C  G+R +V + +   F +K
Sbjct:  144 GVVAGIGAWNYPLQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAGIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_YERPN (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+PL +  WK APAL  GN ++ K +E T LTAL +A ++ EAGLP GV NV++G G   G  L  H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIF DAD+D+A ++A  A FY+ GQ C  G+R +V + +   F +K
Sbjct:  144 GVVAGIGAWNYPLQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAGIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_YERPE (Betaine aldehyde dehydrogenase OS=Yersinia pestis GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+PL +  WK APAL  GN ++ K +E T LTAL +A ++ EAGLP GV NV++G G   G  L  H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIF DAD+D+A ++A  A FY+ GQ C  G+R +V + +   F +K
Sbjct:  144 GVVAGIGAWNYPLQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAGIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_YERPB (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+PL +  WK APAL  GN ++ K +E T LTAL +A ++ EAGLP GV NV++G G   G  L  H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIF DAD+D+A ++A  A FY+ GQ C  G+R +V + +   F +K
Sbjct:  144 GVVAGIGAWNYPLQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAGIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_YERPA (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+PL +  WK APAL  GN ++ K +E T LTAL +A ++ EAGLP GV NV++G G   G  L  H  + K+SFTG   +GK V   AA S LK VT+ELGGKSP IIF DAD+D+A ++A  A FY+ GQ C  G+R +V + +   F +K
Sbjct:  144 GVVAGIGAWNYPLQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAGIYTEAGLPAGVFNVLTGSGDQVGQMLTEHPGIAKVSFTGGIASGKKVMANAAGSTLKDVTMELGGKSPLIIFADADLDKAADIAMMANFYSSGQVCTNGTRVFVPQALQAAFEQK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_PSEU5 (Betaine aldehyde dehydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 74/151 (49.01%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV   I  WN+P+ +  WK APAL  GN ++ K +E TPL+AL +A++F EAGLP GV NV++G G   GA +  H  + K+SFTG   TGK V   AA S+LK VT+ELGGKSP I+ +DAD+D+A ++A  A F++ GQ C  G+R ++
Sbjct:  144 GVVAGIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLSALRLAEIFSEAGLPDGVFNVLTGSGAGVGALITEHPRIAKVSFTGGVATGKKVMASAAGSSLKDVTMELGGKSPLIVCEDADLDRAADIAVMANFFSSGQVCTNGTRVFI 294          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_ECOL5 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 76/162 (46.91%), Postives = 104/162 (64.20%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E TPLTAL +A+++ EAGLP GV NV+ G G   G  L  H  + K+SFTG   +GK V   +A S+LK VT+ELGGKSP I+FDDAD++ A ++A  A F++ GQ C  G+R +V  +    F +K
Sbjct:  144 GVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLELAADIAMMANFFSSGQVCTNGTRVFVPAKCKAAFEQK 305          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_SHIF83.841e-3747.53Betaine aldehyde dehydrogenase OS=Shigella flexner... [more]
BETB_YERP35.016e-3748.15Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_ACIBS5.016e-3749.08Betaine aldehyde dehydrogenase OS=Acinetobacter ba... [more]
BETB_YERPP6.552e-3748.77Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPN6.552e-3748.77Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPE6.552e-3748.77Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_YERPB6.552e-3748.77Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPA6.552e-3748.77Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
BETB_PSEU56.552e-3749.01Betaine aldehyde dehydrogenase OS=Pseudomonas stut... [more]
BETB_ECOL56.552e-3746.91Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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