FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 3.599e-65
Identity = 108/163 (66.26%), Postives = 135/163 (82.82%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR +V E +Y+EFV ++
Sbjct:  178 GVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVRRS 340          

HSP 2 Score: 28.8758 bits (63), Expect = 3.599e-65
Identity = 17/42 (40.48%), Postives = 22/42 (52.38%), Query Frame = 3
Query:  480 RKSKARAMRRIVGDPF-----------RVVLNKVLRLIQSNL 572
            R+S  RA RR+VG PF           +   NK+L LIQS +
Sbjct:  338 RRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGV 379          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.979e-65
Identity = 105/162 (64.81%), Postives = 132/162 (81.48%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+ALY+A L  EAG PPGV+N+++GYGPTAGAA+A HMDVDK++FTG  + G ++Q+ A  SNLK VTLELGGKSP I+  DAD+D AV+  H ALF+N GQCCCAGSRT+V E +Y EF+E+
Sbjct:  179 GVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVDQCHEALFFNMGQCCCAGSRTFVEESIYHEFLER 340          

HSP 2 Score: 35.4242 bits (80), Expect = 7.979e-65
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  539 EQGPQIDPEQFEKVLKYIR 595
            +QGPQ+D EQFEK+L YIR
Sbjct:  359 QQGPQVDKEQFEKILGYIR 377          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.769e-64
Identity = 107/163 (65.64%), Postives = 133/163 (81.60%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ G+GP  GAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR YV E +Y+EFV K+
Sbjct:  178 GVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRKS 340          

HSP 2 Score: 29.6462 bits (65), Expect = 1.769e-64
Identity = 18/42 (42.86%), Postives = 22/42 (52.38%), Query Frame = 3
Query:  480 RKSKARAMRRIVGDPF-----------RVVLNKVLRLIQSNL 572
            RKS  RA R+IVG PF           +   NK+L LIQS +
Sbjct:  338 RKSVKRAKRKIVGSPFDPTTEQGPQIDKKQYNKILELIQSGI 379          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.770e-64
Identity = 106/163 (65.03%), Postives = 134/163 (82.21%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWN PL++FTWK+ PAL+CGNT+V+K AEQTPLTAL++A L  EAG PPGV+N+V GYGPTAG A++SHMD+DK+SFTG  + GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +F++QGQ C A SR +V E +YDEFV ++
Sbjct:  161 GVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGGAISSHMDIDKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEFVRRS 323          

HSP 2 Score: 31.9574 bits (71), Expect = 1.770e-64
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L SG+ QGPQID EQ  K+L  I
Sbjct:  336 LNSGINQGPQIDKEQHNKILGLI 358          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.008e-64
Identity = 105/162 (64.81%), Postives = 133/162 (82.10%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+ALY+A L  EAG PPGV+N+++GYGPTAGAA+A HMDVDK++FTG  + G ++Q+ A  SNLK VTLELGGKSP I+  DAD++ AVE  H ALF+N GQCCCAGSRT+V E +Y+EF+E+
Sbjct:  177 GVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALFFNMGQCCCAGSRTFVEESIYNEFLER 338          

HSP 2 Score: 33.113 bits (74), Expect = 3.008e-64
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  539 EQGPQIDPEQFEKVLKYIR 595
            +QGPQ+D EQFE+VL YI+
Sbjct:  357 QQGPQVDKEQFERVLGYIQ 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 3.008e-64
Identity = 105/162 (64.81%), Postives = 133/162 (82.10%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+ALY+A L  EAG PPGV+N+++GYGPTAGAA+A HMDVDK++FTG  + G ++Q+ A  SNLK VTLELGGKSP I+  DAD++ AVE  H ALF+N GQCCCAGSRT+V E +Y+EF+E+
Sbjct:  177 GVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALFFNMGQCCCAGSRTFVEESIYNEFLER 338          

HSP 2 Score: 33.113 bits (74), Expect = 3.008e-64
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  539 EQGPQIDPEQFEKVLKYIR 595
            +QGPQ+D EQFE+VL YI+
Sbjct:  357 QQGPQVDKEQFERVLGYIQ 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.922e-64
Identity = 104/162 (64.20%), Postives = 133/162 (82.10%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+ALY+A L  EAG PPGV+N+++GYGPTAGAA+A HMDVDK++FTG  + G ++Q+ A +SNLK VTLELGGKSP I+  DAD++ AV+  H ALF+N GQCCCAGSRT+V E +Y EF+E+
Sbjct:  179 GVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGESNLKRVTLELGGKSPSIVLADADMEHAVDQCHEALFFNMGQCCCAGSRTFVEESIYREFLER 340          

HSP 2 Score: 34.2686 bits (77), Expect = 3.922e-64
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  539 EQGPQIDPEQFEKVLKYIR 595
            +QGPQ+D EQFE++L YIR
Sbjct:  359 QQGPQVDKEQFERILGYIR 377          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.115e-64
Identity = 106/163 (65.03%), Postives = 133/163 (81.60%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ G+GP  GAA+ASH+ +DK++FTG  + GK++QE A +SNLK VTLELGGKSP IIF DAD+D AVE AH  +F+NQGQCC AGSR YV E +Y+EFV ++
Sbjct:  178 GVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRRS 340          

HSP 2 Score: 29.261 bits (64), Expect = 5.115e-64
Identity = 17/42 (40.48%), Postives = 22/42 (52.38%), Query Frame = 3
Query:  480 RKSKARAMRRIVGDPF-----------RVVLNKVLRLIQSNL 572
            R+S  RA RR+VG PF           +   NK+L LIQS +
Sbjct:  338 RRSVERAKRRVVGSPFDPTTEQGPQIDKKQYNKILELIQSGI 379          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.928e-63
Identity = 106/163 (65.03%), Postives = 132/163 (80.98%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWN PL+LF WK+  AL+CGNT+++K AEQTPLTALY+A L  EAG PPGV+NVV GYG TAGAA++SHMD+DK+SFTG  + GK+++E A KSNLK VTLELGGKSP I+F DAD+D AVE AH  +F++QGQ C A SR +V E +YDEFV ++
Sbjct:  161 GVCGQIIPWNGPLILFIWKIGAALSCGNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNVVPGYGSTAGAAISSHMDIDKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEFVRRS 323          

HSP 2 Score: 31.9574 bits (71), Expect = 1.928e-63
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L SG+ QGPQID EQ  K+L  I
Sbjct:  336 LDSGISQGPQIDKEQHAKILDLI 358          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.575e-63
Identity = 112/163 (68.71%), Postives = 131/163 (80.37%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV GQI+PWNFPLL+   K+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+NVV G+GPTAGAA+ASH DVDK++FTG  + G ++Q  A +SNLK VTLELGGKSP II  DAD+D AVE AHFALF+NQGQCC AGSRT+V E VY EFVE++
Sbjct:  160 GVCGQIIPWNFPLLMQAAKLGPALATGNVVVMKVAEQTPLTALYVANLTKEAGFPPGVVNVVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGRSNLKKVTLELGGKSPNIIVSDADMDWAVEQAHFALFFNQGQCCGAGSRTFVQEDVYAEFVERS 322          

HSP 2 Score: 32.3426 bits (72), Expect = 5.575e-63
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  530 SGVEQGPQIDPEQFEKVLKYIR 595
            S  EQGPQ+D  QF KVL YI+
Sbjct:  337 SQTEQGPQVDETQFNKVLGYIK 358          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL1A2_HUMAN3.599e-6566.26Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1B1_RAT7.979e-6564.81Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1A2_TAEGU1.769e-6465.64Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
AL1A7_MOUSE1.770e-6465.03Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1B1_PONAB3.008e-6464.81Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN3.008e-6464.81Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
AL1B1_MOUSE3.922e-6464.20Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1A2_CHICK5.115e-6465.03Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A7_RAT1.928e-6365.03Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
ALDH2_HORSE5.575e-6368.71Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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