FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_PSEPK (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 75/162 (46.30%), Postives = 102/162 (62.96%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E T LT L +A+++ EAGLP GV NV++G G   G  L  H  ++K+SFTG   TGK V   A+ S+LK VT+ELGGKSP II  DAD+D+A ++A  A FY+ GQ C  G+R ++   +   F  K
Sbjct:  144 GVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAEMKAAFEAK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_PSEPG (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 75/162 (46.30%), Postives = 102/162 (62.96%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E T LT L +A+++ EAGLP GV NV++G G   G  L  H  ++K+SFTG   TGK V   A+ S+LK VT+ELGGKSP II  DAD+D+A ++A  A FY+ GQ C  G+R ++   +   F  K
Sbjct:  144 GVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAEMKAAFEAK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_PSEP1 (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.595e-35
Identity = 75/162 (46.30%), Postives = 102/162 (62.96%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN ++ K +E T LT L +A+++ EAGLP GV NV++G G   G  L  H  ++K+SFTG   TGK V   A+ S+LK VT+ELGGKSP II  DAD+D+A ++A  A FY+ GQ C  G+R ++   +   F  K
Sbjct:  144 GVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPNGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTTTGKKVMASASSSSLKEVTMELGGKSPLIICADADLDKAADIAMMANFYSSGQVCTNGTRVFIPAEMKAAFEAK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.893e-35
Identity = 79/173 (45.66%), Postives = 107/173 (61.85%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFV----EKARHVQ*G 507
            G+   I  WN+P  +  WK APAL  GN +V K +E TPL AL +A++  EAGLPPG+ NVV G G   GAAL S   V K+S TG   TG+ V   AA+  ++ VT+ELGGKSP I+FDDAD++ A+  A    FY+ GQ C  G+R +V + + + F+    E+A  +Q G
Sbjct:  143 GLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRG-AVGAALVSDSRVAKVSLTGSVPTGRRVYAAAAE-GVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNFYSSGQICSNGTRVFVQKGIKEAFLARLAERADAIQMG 313          

HSP 2 Score: 28.1054 bits (61), Expect = 3.893e-35
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L   V+ GP + P Q EKVL YI
Sbjct:  316 LDPEVQMGPLVSPAQLEKVLSYI 338          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.132e-35
Identity = 76/159 (47.80%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEF 477
            GV G + PWNFPL + T KV PAL CG T+V+K +E TPLTAL  A L  +AG+P G +NVV G  P  G AL     V K++FTG    GK +   +A + +K V+LELGG +P I+FDDAD+D A++ +  A F N GQ C   +R  V E +Y++F
Sbjct:  191 GVVGAVTPWNFPLAMITRKVGPALACGCTVVVKPSEFTPLTALAAADLALQAGIPAGAINVVMGNAPEIGDALLQSTQVRKITFTGSTAVGKKLMAGSA-NTVKKVSLELGGNAPCIVFDDADIDVAIKGSLAAKFRNSGQTCVCANRILVQEGIYEKF 348          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: A9A1B_DANRE (Aldehyde dehydrogenase family 9 member A1-B OS=Danio rerio GN=aldh9a1b PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.132e-35
Identity = 73/162 (45.06%), Postives = 106/162 (65.43%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P  +  WK APA+ CGN++V K +  TP+TA+ +A+++ +AG P G+ NVV G G   G+ L  H  V+K+SFTG   TGK + E+A++  +K VTLELGGKSP IIF+D D++ AV  A  A F +QGQ C  G+R +V   +  +F+++
Sbjct:  172 GVCVGIGAWNYPFQIAAWKSAPAIACGNSMVFKPSPLTPVTAVLLAEIYRQAGAPEGLFNVVQG-GQETGSLLCLHPSVEKVSFTGSVPTGKKIMEMASR-GVKAVTLELGGKSPLIIFEDTDLENAVRGALMANFLSQGQVCSNGTRVFVQSSIVPQFLKE 331          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_CITK8 (Gamma-aminobutyraldehyde dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=CKO_01478 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 78/162 (48.15%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A+ F +   PPGVLNV+ G G T G  L  H  V  +S TG   TG+ + +  A S +K   +ELGGK+P I+FDDAD+D  VE      FYN GQ C A  R Y  + +YD  VEK
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAE-FAKDIFPPGVLNVLFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHIIQHTAPS-IKRTHMELGGKAPVIVFDDADLDAVVEGVRTFGFYNAGQDCTAACRIYAQKGIYDALVEK 299          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_AGRRK (Betaine aldehyde dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.784e-34
Identity = 80/177 (45.20%), Postives = 109/177 (61.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I  WN+P  +  WK APAL  GN +V K +E TPL AL +A++  EAGLP G+ NV+ G   T G  L +H DV K+S TG   TG+ V   AA S LK VT+ELGGKSP I+FDDAD+D A+  A    FY+ GQ C  G+R +V+ ++  EF+++ +     +L+  P +
Sbjct:  144 GVCVGIGAWNYPQQIACWKGAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLYNVIQGDRET-GPLLINHPDVAKVSLTGSVPTGRKVAAAAAGS-LKHVTMELGGKSPLIVFDDADIDSAIGGAMLGNFYSTGQVCSNGTRVFVNRKIKAEFLKRLKARTEAMLIGDPMD 318          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_AGRT5 (Betaine aldehyde dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betB PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 79/178 (44.38%), Postives = 107/178 (60.11%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSEW 534
            GV   I  WN+P  +  WK APAL  GN +V K +E TPL AL +A++  EAGLP G+ NV+ G   T G  L +H DV K+S TG   TG+ V   AA  +LK VT+ELGGKSP I+FDDAD++ AV  A    FY+ GQ C  G+R +V ++    F+E  +     ++L  P ++
Sbjct:  150 GVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDT-GPLLVNHPDVAKVSLTGSVPTGRKVAAAAA-GHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAKARFLENLKRRTEAMILGDPLDY 325          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_SALPC (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=ydcW PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A L  +   PPGVLNV+ G G T G  L  H  V  +S TG   TG+ +    A + +K   +ELGGK+P I+FDDAD+D A +      FYN GQ C A  R Y    +YD  VEK  +    + +  P +
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDI-FPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSISTGEHILRHTAPA-IKRTHMELGGKAPVIVFDDADLDAAAQGVRTFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPED 314          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_PSEPK3.595e-3546.30Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEPG3.595e-3546.30Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEP13.595e-3546.30Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_RHOS53.893e-3545.66Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
SSDH_ORYSJ6.132e-3547.80Succinate-semialdehyde dehydrogenase, mitochondria... [more]
A9A1B_DANRE6.132e-3545.06Aldehyde dehydrogenase family 9 member A1-B OS=Dan... [more]
ABDH_CITK81.046e-3448.15Gamma-aminobutyraldehyde dehydrogenase OS=Citrobac... [more]
BETB_AGRRK1.784e-3445.20Betaine aldehyde dehydrogenase OS=Agrobacterium ra... [more]
BETB_AGRT52.330e-3444.38Betaine aldehyde dehydrogenase OS=Agrobacterium tu... [more]
ABDH_SALPC2.330e-3443.50Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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