FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_RHISN (Betaine aldehyde dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.043e-34
Identity = 78/177 (44.07%), Postives = 108/177 (61.02%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I  WN+P  +  WK APAL  GN++V K +E TPL AL +A++  EAGLP G+ NV+ G   T G  L +H DV K+S TG   TGK V   AA + LK VT+ELGGKSP I+FDDAD++ A+  A    FY+ GQ C  G+R +V  ++ D F+ + +     +++  P +
Sbjct:  144 GVCVGIGAWNYPQQIACWKGAPALAAGNSMVFKPSENTPLGALKIAEILIEAGLPKGLYNVIQGDRST-GPLLVNHPDVAKVSLTGSVPTGKKVAAAAA-AELKHVTMELGGKSPLIVFDDADLESAIGGAMLGNFYSTGQVCSNGTRVFVQRKIKDAFLARLKERTEAIVIGDPMD 318          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_SALCH (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella choleraesuis GN=ydcW PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.975e-34
Identity = 77/177 (43.50%), Postives = 102/177 (57.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A L  +   PPGVLNV+ G G T G  L  H  V  +S TG   TG+ +    A + +K   +ELGGK+P I+FDDAD+D A +      FYN GQ C A  R Y    +YD  VEK  +    + +  P +
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDI-FPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPA-IKRTHMELGGKAPVIVFDDADLDAAAQGVRTFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPED 314          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_SINMW (Betaine aldehyde dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.780e-34
Identity = 77/177 (43.50%), Postives = 109/177 (61.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I  WN+P  +  WK APAL  GN++V K +E TPL AL +A++  EAGLP G+ NVV G   T G  L +H DV K+S TG   TG+ V E AA + L+ VT+ELGGKSP I+FDDAD++ A+  A    FY+ GQ C  G+R +V +++   F+ + +     +++  P +
Sbjct:  144 GVCVGIGAWNYPQQIACWKGAPALVAGNSMVFKPSENTPLGALKIAEILIEAGLPKGLYNVVQGDRST-GPLLVNHPDVAKVSLTGSVPTGRKVYE-AAAAGLRHVTMELGGKSPLIVFDDADLESAIGGAMLGNFYSTGQVCSNGTRVFVQKKIKQSFLARLKERTDAIVIGDPMD 318          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_SHISS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella sonnei (strain Ss046) GN=ydcW PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.780e-34
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWN+PL++  WK+APAL  GN +VLK +E TPLTAL +A+L  +   P GV+N++ G G T G  L  H  V  +S TG   TG+ +   AA S++K   +ELGGK+P I+FDDAD++  VE      +YN GQ C A  R Y  + +YD  VEK
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHAA-SSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEK 299          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_ENT38 (Gamma-aminobutyraldehyde dehydrogenase OS=Enterobacter sp. (strain 638) GN=Ent638_2124 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.780e-34
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A+L  +   P GVLNV+ G G T G  L  H  V  +S TG   TG+ +    A S++K   +ELGGK+P I+FDDAD+D  VE      FYN GQ C A  R Y  + +Y + VEK
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAELAKDI-FPAGVLNVLFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHIISHTA-SSIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQKGIYPQLVEK 299          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH1_SCHPO (Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP+] OS=Schizosaccharomyces pombe GN=SPAC1002.12c PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.855e-34
Identity = 74/162 (45.68%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA-GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV G I PWNFP  + T KV  AL  G T+V++ A +TP TAL +AKL   AG+P GVLN+V+   P+  G  L ++  + K+SFTG  + GKI+ +  + S LK ++LELGG +PFI+F+DAD+++A +      F   GQ C   +R YVH  VYD FV+
Sbjct:  161 GVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAKLAERAGVPAGVLNMVTANSPSEHGIELTTNPLIRKVSFTGSTNVGKILAK-QSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMACKFRGSGQTCVCANRIYVHSSVYDAFVD 321          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_SALTI (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhi GN=ydcW PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 76/177 (42.94%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A L  +   PPGVLNV+ G G T G  L  H  V  +S TG   TG+ +    A + +K   +ELGGK+P I+FDDAD+D   +      FYN GQ C A  R Y    +YD  VEK  +    + +  P +
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDI-FPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPA-IKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPED 314          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_SALPB (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydcW PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 76/177 (42.94%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A L  +   PPGVLNV+ G G T G  L  H  V  +S TG   TG+ +    A + +K   +ELGGK+P I+FDDAD+D   +      FYN GQ C A  R Y    +YD  VEK  +    + +  P +
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDI-FPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPA-IKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGTPED 314          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ABDH_SALPA (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi A GN=ydcW PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.156e-33
Identity = 76/177 (42.94%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I PWN+PL++  WK+APAL  GN +V+K +E TPLTAL +A L  +   PPGVLNV+ G G T G  L  H  V  +S TG   TG+ +    A + +K   +ELGGK+P I+FDDAD+D   +      FYN GQ C A  R Y    +YD  VEK  +    + +  P +
Sbjct:  140 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDI-FPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPA-IKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPED 314          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB1_RHIME (Betaine aldehyde dehydrogenase 1 OS=Rhizobium meliloti GN=betB1 PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.510e-33
Identity = 77/175 (44.00%), Postives = 106/175 (60.57%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIP 525
            GV   I  WN+P  +  WK APAL  GN +V K +E TPL AL +A++  EAGLP G+ NV+ G   T G  L +H DV K+S TG   TGK V   AA + LK VT+ELGGKSP I+FDDAD++ A+  A    FY+ GQ C  G+R +V  ++ + F+ + +     +++  P
Sbjct:  144 GVCVGIGAWNYPQQIACWKGAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRAT-GPLLVNHPDVAKVSLTGSVPTGKKVAG-AAAAELKHVTMELGGKSPLIVFDDADLESAIGGAMLGNFYSTGQVCSNGTRVFVQRKIKEPFLARLKERTEAIVIGDP 316          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_RHISN3.043e-3444.07Betaine aldehyde dehydrogenase OS=Rhizobium sp. (s... [more]
ABDH_SALCH3.975e-3443.50Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
BETB_SINMW6.780e-3443.50Betaine aldehyde dehydrogenase OS=Sinorhizobium me... [more]
ABDH_SHISS6.780e-3446.30Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_ENT386.780e-3446.91Gamma-aminobutyraldehyde dehydrogenase OS=Enteroba... [more]
SSDH1_SCHPO8.855e-3445.68Putative succinate-semialdehyde dehydrogenase C100... [more]
ABDH_SALTI1.156e-3342.94Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ABDH_SALPB1.156e-3342.94Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ABDH_SALPA1.156e-3342.94Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
BETB1_RHIME1.510e-3344.00Betaine aldehyde dehydrogenase 1 OS=Rhizobium meli... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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