FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.832e-31
Identity = 77/164 (46.95%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GVA  I PWNFP  + T KV  AL  G T+V+K AE TP +AL +A+L  +AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   +R  V   ++D FV+
Sbjct:  196 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGALASKFRNTGQTCVCSNRFLVQRGIHDAFVK 358          

HSP 2 Score: 21.557 bits (44), Expect = 6.832e-31
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G  QGP I+ +  EKV K +
Sbjct:  375 EEGTTQGPLINEKAVEKVEKQV 396          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_PONPY (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pongo pygmaeus GN=ALDH5A1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.508e-30
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GVA  I PWNFP  + T KV  AL  G T+V+K AE TP +AL +A+L  +AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV+
Sbjct:  196 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVK 358          

HSP 2 Score: 21.557 bits (44), Expect = 1.508e-30
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G  QGP I+ +  EKV K +
Sbjct:  375 EEGTTQGPLINEKAVEKVEKQV 396          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_PANTR (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan troglodytes GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.508e-30
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GVA  I PWNFP  + T KV  AL  G T+V+K AE TP +AL +A+L  +AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV+
Sbjct:  196 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVK 358          

HSP 2 Score: 21.557 bits (44), Expect = 1.508e-30
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G  QGP I+ +  EKV K +
Sbjct:  375 EEGTTQGPLINEKAVEKVEKQV 396          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.508e-30
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GVA  I PWNFP  + T KV  AL  G T+V+K AE TP +AL +A+L  +AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV+
Sbjct:  196 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVK 358          

HSP 2 Score: 21.557 bits (44), Expect = 1.508e-30
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G  QGP I+ +  EKV K +
Sbjct:  375 EEGTTQGPLINEKAVEKVEKQV 396          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.508e-30
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GVA  I PWNFP  + T KV  AL  G T+V+K AE TP +AL +A+L  +AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV+
Sbjct:  196 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVK 358          

HSP 2 Score: 21.557 bits (44), Expect = 1.508e-30
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G  QGP I+ +  EKV K +
Sbjct:  375 EEGTTQGPLINEKAVEKVEKQV 396          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH_GORGO (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Gorilla gorilla gorilla GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.508e-30
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GVA  I PWNFP  + T KV  AL  G T+V+K AE TP +AL +A+L  +AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV+
Sbjct:  196 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVK 358          

HSP 2 Score: 21.557 bits (44), Expect = 1.508e-30
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G  QGP I+ +  EKV K +
Sbjct:  375 EEGTTQGPLINEKAVEKVEKQV 396          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALD1_STAHJ (Putative aldehyde dehydrogenase SH0913 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0913 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.041e-30
Identity = 67/160 (41.88%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFV 480
            GV+G + PWNFP    + K+A A   G+ +VLK +E+TP  A+ +A++F + G+P GV N+V+G G   G  L+ H  V  +SFTG   TG  + E A+K + K V+LELGGKSP+I+ DD DV +A +     +  N GQ C AG+R  + E   ++F+
Sbjct:  138 GVSGLVTPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGVFNLVNGDGEGVGNPLSEHPKVRMMSFTGSGRTGSKIMEKASK-DFKKVSLELGGKSPYIVLDDVDVKEAAKATTGKVVNNTGQVCTAGTRILIPESKKEDFL 296          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDH5_BACSU (Putative aldehyde dehydrogenase yfmT OS=Bacillus subtilis GN=yfmT PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.757e-30
Identity = 72/162 (44.44%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA-LYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV G I P+NFP  L    VAPAL  GN +VLK  E+TP+     +AK+F  AG+P G+LNVV       G +   H     +SFTG    G  + +LA K   KP+ LELGG S FI+ +DAD++ AV  A F+ F +QGQ C + +R  VH  +YD+F+E
Sbjct:  145 GVVGVISPFNFPFFLSMKSVAPALGAGNGVVLKPHEETPICGGTLIAKIFENAGIPAGLLNVVVTDIAEIGDSFVEHPVPRIISFTGSTKVGSYIGQLAMKHFKKPL-LELGGNSAFIVLEDADIEYAVNAAVFSRFTHQGQICMSANRVLVHSSIYDKFLE 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: SSDH2_SCHPO (Putative succinate-semialdehyde dehydrogenase C139.05 [NADP+] OS=Schizosaccharomyces pombe GN=SPAC139.05 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.948e-29
Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTA-GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV+  I PWNFP  +   K   AL  G T +   A +TP   L + +L  EAG P GVLNV++    +A G  L ++  V K+SFTG  + GKI+   +A S +K V++ELGG +PFI+F D  +DQAVE      F + GQ C   +R YVH+ VYDEFV K
Sbjct:  156 GVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQEAGFPDGVLNVITSSDASAHGKELTTNPIVRKVSFTGSTNVGKILMGQSA-STIKKVSMELGGNAPFIVFPDFPIDQAVESFCTIKFNSCGQVCVCPNRVYVHKNVYDEFVSK 317          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: XYLC_PSEPU (Benzaldehyde dehydrogenase [NAD+] OS=Pseudomonas putida GN=xylC PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.576e-29
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA-LYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWNFPL L    VAPAL  GN ++LK   QT +T    +A++F +AG+P GVL+V+ G G   G ++ ++  ++ +SFTG    G+++ E   +  LK V LELGG +  I+  DAD++ AV  A +  F +QGQ C A  R  VH  V  ++ EK
Sbjct:  147 GVVGVIAPWNFPLFLAMRSVAPALALGNAVILKPDLQTAVTGGALIAEIFSDAGMPDGVLHVLPG-GADVGESMVANSGINMISFTGSTQVGRLIGEKCGRM-LKKVALELGGNNVHIVLPDADLEGAVSCAAWGTFLHQGQVCMAAGRHLVHRDVAQQYAEK 307          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSDH_HYLLA6.832e-3146.95Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PONPY1.508e-3046.34Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANTR1.508e-3046.34Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANPA1.508e-3046.34Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HUMAN1.508e-3046.34Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_GORGO1.508e-3046.34Succinate-semialdehyde dehydrogenase, mitochondria... [more]
ALD1_STAHJ2.041e-3041.88Putative aldehyde dehydrogenase SH0913 OS=Staphylo... [more]
ALDH5_BACSU7.757e-3044.44Putative aldehyde dehydrogenase yfmT OS=Bacillus s... [more]
SSDH2_SCHPO2.948e-2944.17Putative succinate-semialdehyde dehydrogenase C139... [more]
XYLC_PSEPU8.576e-2941.72Benzaldehyde dehydrogenase [NAD+] OS=Pseudomonas p... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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