FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: NAHF_PSEU8 (Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (strain C18) GN=doxF PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   16 IVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGY---GPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            IVPWN   +L    +A  L CGNT+V K +E +P T   + +   EAGLP GVLN ++      P    AL S  ++ +++FTG    G I+ + AA+ +LK   LELGGKSP I+ DDAD+D AV+ A F  F  QGQ C +  R  V E++ DEFV K
Sbjct:  145 IVPWNGTAVLAARAIAYPLVCGNTVVFKGSEFSPATHALITQCVQEAGLPAGVLNYLNSSPDRSPEIADALISAKEIRRINFTGSTRVGSIIAQKAAQ-HLKRCLLELGGKSPLIVLDDADIDAAVKAAVFGSFLFQGQICMSTERLIVDEKIADEFVAK 303          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: NAHF_PSEPU (Salicylaldehyde dehydrogenase OS=Pseudomonas putida GN=nahF PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   16 IVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGY---GPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            IVPWN   +L    +A  L CGNT+V K +E +P T   + +   EAGLP GVLN ++      P    AL S  ++ +++FTG    G I+ + AA+ +LK   LELGGKSP I+ DDAD+D AV+ A F  F  QGQ C +  R  V E++ DEFV K
Sbjct:  145 IVPWNGTAVLAARAIAYPLVCGNTVVFKGSEFSPATHALITQCVQEAGLPAGVLNYLNSSPDRSPEIADALISAKEIRRINFTGSTRVGSIIAQKAAQ-HLKRCLLELGGKSPLIVLDDADIDAAVKAAVFGSFLFQGQICMSTERLIVDEKIADEFVAK 303          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA1_BACHD (1-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacillus halodurans GN=rocA1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.525e-28
Identity = 67/167 (40.12%), Postives = 90/167 (53.89%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWNF L +        +  GNT+VLK A  TP+ A    ++  +AGLP GV+N V G G   G  L  H     ++FTG  D G  + E AA     +++LK V +E+GGK   ++  DAD+D A E    + F   GQ C AGSR  +H+ VYDE +EK
Sbjct:  173 GVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEK 339          

HSP 2 Score: 24.6386 bits (52), Expect = 6.525e-28
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  545 GPQIDPEQFEKVLKYI 592
            GP ID + FEK++ YI
Sbjct:  360 GPVIDEKAFEKIMSYI 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDY_BACSU (Uncharacterized aldehyde dehydrogenase aldY OS=Bacillus subtilis GN=aldY PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.482e-28
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA-LYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I P+NFP+ L    +APA+  GN++V K   QT ++    +AK F  AGLP GVLNV+       G  + ++     +SFTG    G+ + E+A ++  K + LELGG +PF +  DADVD+AV+ A F  F +QGQ C   +R  VH+ VYDEFVEK
Sbjct:  145 GVISSISPFNFPMNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIAGRA-FKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDEFVEK 306          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: LADH_META3 (Lactaldehyde dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1030 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.706e-27
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEA----GLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            G+ G I P+NFPL LF  K+APA+  GN+IV   + + P+  + + K+  +      +P GV N+++G G   G  +  +  ++KLSFTG  + G   + +  K+  K +TLELGG +P II  DA++++AVE      F N GQ C +  R  + + V DEF+ K
Sbjct:  131 GLVGAITPFNFPLNLFAHKIAPAIAMGNSIVAHPSSKAPMITIELTKIIEKVLKSKKIPLGVFNLLTGEGHIVGDEIVKNNKINKLSFTGSVEVG---ESITKKAGFKKITLELGGNNPMIILKDANINKAVESCMSGKFLNSGQVCISVGRVLIEQEVADEFINK 293          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACP2 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus pumilus (strain SAFR-032) GN=rocA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.187e-26
Identity = 64/171 (37.43%), Postives = 89/171 (52.05%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAK-----SNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHV 498
            GV   I PWNF   +        +  GNT+VLK A  TP+ A    +   +AGLP GV+N V G G   G  L  H     ++FTG  + G  + E AAK      +LK V  E+GGK   ++ +DADV+ A      + F   GQ C AGSR  VHE++YD+ +E+ + +
Sbjct:  173 GVTLVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAARFVEELEQAGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQQHLKRVIAEMGGKDTVVVDEDADVELAANAIFTSAFGFSGQKCSAGSRAVVHEKLYDQVIERVKEI 343          

HSP 2 Score: 23.8682 bits (50), Expect = 1.187e-26
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  524 LQSGVEQGPQIDPEQFEKVLKYI 592
            L + V  GP ID   F+K+  YI
Sbjct:  353 LSADVYMGPVIDQASFDKITDYI 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACSU (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus subtilis GN=rocA PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 70/168 (41.67%), Postives = 89/168 (52.98%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV   I P+NFPL +       A+  GNTI+LK A+  P+ A    ++  EAGLP GVLN + G G   G  L  H     +SFTG    G  + E AAK       LK V  E+GGK   ++  DAD+D A     ++ F   GQ C AGSR  +H+ VYDE VEKA
Sbjct:  173 GVGIVISPFNFPLAIMAGTAVAAIVTGNTILLKPADAAPVVAAKFVEVMEEAGLPNGVLNYIPGDGAEIGDFLVEHPKTRFVSFTGSRAVGCRIYERAAKVQPGQKWLKRVIAEMGGKDTVLVDKDADLDLAASSIVYSAFGYSGQKCSAGSRAVIHQDVYDEVVEKA 340          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA2_BACSU (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus subtilis GN=ycgN PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 66/180 (36.67%), Postives = 93/180 (51.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAK-----SNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIP 525
            GV   I PWNF   +        +  GNT+VLK A  TP+ A    ++  E+GLP GV+N V G G   G  L  H     ++FTG  + G  + E AAK      +LK V  E+GGK   ++ +DAD++ A +    + F   GQ C AGSR  VHE+VYD+ +E+   +    + A P
Sbjct:  173 GVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDQVLERVIEITESKVTAKP 352          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: LADH_METVS (Lactaldehyde dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0796 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEA----GLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFPL L T K+ PA+  GN +VL  + + P+TA+Y+ K+         +  GV N+ +G G   G  +A +  ++ LSFTG  + G+++ +    S +K V LELGG +P I+  D+D++ A + A  + F N GQ C +  +  V E V + F +K
Sbjct:  131 GVVGAITPFNFPLNLITHKIGPAIATGNAVVLHPSSKAPITAIYLTKVIEHVLKKMNIERGVFNLTTGNGEIVGDEIAKNEKINFLSFTGSVEVGELISK---SSYMKKVALELGGNNPLIVLKDSDIELAAKSAVKSKFLNSGQVCISVGKVIVEEEVLETFTKK 293          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA2_BACHD (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus halodurans GN=rocA2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 66/168 (39.29%), Postives = 89/168 (52.98%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV   I PWNF L +        +  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     ++FTG  D G  + E AA     + +LK V +E+GGK   ++  DAD+D A +    + F   GQ C AGSR  +H+ VYD  +EKA
Sbjct:  173 GVCVTISPWNFALAIMAGTTVAPIVTGNTVLLKPASTTPVVAAKFVEVLEEAGLPKGVVNFVPGSGTDIGDYLIDHPKTSLITFTGSRDVGVRLYERAAVVHPGQQHLKRVIVEMGGKDTVVVDKDADLDLAAQSIVTSAFGFSGQKCSAGSRAVIHQDVYDVVLEKA 340          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NAHF_PSEU81.463e-2843.75Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (... [more]
NAHF_PSEPU1.463e-2843.75Salicylaldehyde dehydrogenase OS=Pseudomonas putid... [more]
ROCA1_BACHD6.525e-2840.121-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacil... [more]
ALDY_BACSU9.482e-2842.94Uncharacterized aldehyde dehydrogenase aldY OS=Bac... [more]
LADH_META34.706e-2736.75Lactaldehyde dehydrogenase OS=Methanococcus aeolic... [more]
ROCA_BACP21.187e-2637.431-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACSU2.336e-2641.671-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA2_BACSU5.203e-2636.671-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]
LADH_METVS5.203e-2636.14Lactaldehyde dehydrogenase OS=Methanococcus vannie... [more]
ROCA2_BACHD6.796e-2639.291-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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