FC869243 | Citrus Genome Database

Overview


Name	FC869243
Unique Name	FC869243
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	596

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACCN (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.511e-26
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N + G G   G  L  H     +SFTG  D G  + E AAK +     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD+ + +A  +   + +  P+E
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFIPGSGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEEVYDQVLNRAVELTKELTVGNPAE 354

HSP 2 Score: 23.0978 bits (48), Expect = 7.511e-26
Identity = 8/22 (36.36%), Postives = 12/22 (54.55%), Query Frame = 2

Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G   GP  D   F+KV+ Y+
Sbjct:  354 EKGTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACHK (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACCZ (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACCQ (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain Q1) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACC7 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain AH187) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACC3 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACC1 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ATCC 10987) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGSGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACC0 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain AH820) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACAN (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACAH (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2

Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375

The following BLAST results are available for this feature:

BLAST of FC869243 vs. ExPASy Swiss-Prot

BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ROCA_BACCN	7.511e-26	36.81	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACHK	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACCZ	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACCQ	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACC7	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACC3	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACC1	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACC0	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACAN	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]
ROCA_BACAH	9.776e-26	38.12	1-pyrroline-5-carboxylate dehydrogenase OS=Bacillu...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT