FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACAC (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353          

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACAA (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus anthracis (strain A0248) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.776e-26
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353          

HSP 2 Score: 22.3274 bits (46), Expect = 9.776e-26
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACCR (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.272e-25
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353          

HSP 2 Score: 22.3274 bits (46), Expect = 1.272e-25
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACC4 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain B4264) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.272e-25
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353          

HSP 2 Score: 22.3274 bits (46), Expect = 1.272e-25
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACC2 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain G9842) GN=rocA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.272e-25
Identity = 69/181 (38.12%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPS 528
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A  +   + +A P+
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRAVELTKELTVANPA 353          

HSP 2 Score: 22.3274 bits (46), Expect = 1.272e-25
Identity = 8/20 (40.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  533 GVEQGPQIDPEQFEKVLKYI 592
            G   GP  D   F+KV+ Y+
Sbjct:  356 GTNMGPVNDQAAFDKVMSYV 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAS1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.805e-25
Identity = 68/168 (40.48%), Postives = 86/168 (51.19%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TPLTA  + ++  EAGLP GV+N V G     G  L   +    ++FTG   TG  + E AAK       LK V  E+GGK   ++  D D D A E    + F   GQ C A SR  VH+ VYDE +EKA
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPLTAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDSVHTHFVTFTGSRATGTRIFERAAKVQDGQQFLKRVIAEMGGKDAIVVDKDIDTDLAAESIVSSAFGFSGQKCSACSRAIVHKDVYDEVLEKA 340          

HSP 2 Score: 22.7126 bits (47), Expect = 2.805e-25
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            ++    GP I+ +QF+K+  YI
Sbjct:  353 ENNTYMGPVINQKQFDKIKNYI 374          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.753e-25
Identity = 58/165 (35.15%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFH----EAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV G I P+NFPL L T K+ PA+  GN++VL  + + P+ A+Y+ K+      +  +P GV N+ +G G   G  ++ + +V+ +SFTG  + G   + ++  + +K VTLELGG +P I+  D+D+  A + A  + F N GQ C +  +  V E V + F +
Sbjct:  131 GVIGAITPFNFPLNLATHKIGPAIATGNSVVLHPSSKAPIVAIYLTKIIEHVLKQMDIPRGVFNLATGNGEIVGDEISKNDNVNMVSFTGSVEVG---ESISKNAKMKKVTLELGGNNPMIVLKDSDIKLAAKSAVKSKFLNAGQVCISVGQVLVEEEVVETFTK 292          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACWK (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=rocA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            GV   I PWNFP  +       A+  GNT++LK A  TP+ A    ++  EAGLP GV+N V G G   G  L  H     +SFTG  D G  + E AAK N     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  +HE VYD  + +A
Sbjct:  173 GVGVIISPWNFPFAIMAGMTTAAVVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVGDYLVDHPRTRFVSFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGFSGQKCSACSRAVIHEDVYDHVLNRA 340          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_BACLD (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rocA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAK-----SNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWNF   +        +  GNT+VLK A   P+ A    ++  E+GLP GV+N V G G   G  L  H     ++FTG  + G  + E AAK     ++LK V  E+GGK   ++ +D D++ A +    + F   GQ C AGSR  VHE+VYDE +++
Sbjct:  174 GVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASAAPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSIITFTGSREVGTRIFERAAKVQPGQTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDEVLKR 340          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_OCEIH (1-pyrroline-5-carboxylate dehydrogenase OS=Oceanobacillus iheyensis GN=rocA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.813e-25
Identity = 65/177 (36.72%), Postives = 92/177 (51.98%), Query Frame = 1
Query:   16 IVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAK-----SNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            I PWNF   +        +  GN ++LK +E TP+ A  + ++  EAGLP GVLN V G     G  L  H D   ++FTG   TG  + E A K     ++LK +  E+GGK   I+ + AD+D A E    + F   GQ C A SR  +HE VYDE +EK+  +   + +  P+E
Sbjct:  178 IPPWNFAFAIVCGTTVAPIVAGNPVLLKPSENTPVIAYKLVEVLEEAGLPKGVLNFVPGDPAEIGDYLVDHKDTHFINFTGSRATGVRIFERATKIQDGQTHLKRIVAEMGGKDTIIVDESADLDLAAESIVHSAFGFSGQKCSACSRAVIHESVYDEVIEKSVELAKTLTVGNPTE 354          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_BACAC9.776e-2638.121-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACAA9.776e-2638.121-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACCR1.272e-2538.121-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACC41.272e-2538.121-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACC21.272e-2538.121-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_STAS12.805e-2540.481-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
LADH_METMP5.753e-2535.15Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ROCA_BACWK7.513e-2539.291-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACLD7.513e-2537.131-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_OCEIH9.813e-2536.721-pyrroline-5-carboxylate dehydrogenase OS=Oceanob... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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