FC869243 | Citrus Genome Database

Overview


Name	FC869243
Unique Name	FC869243
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	596

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.813e-25
Identity = 56/165 (33.94%), Postives = 94/165 (56.97%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFH----EAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV G I P+NFPL L T K+ PA+  GN+++L  + + P+ A+Y+ K+      +  +P GV N+ +G G   G  ++ +  ++ +SFTG  + G   + ++  + +K VTLELGG +P I+  D+D+  A + A  + F N GQ C +  +  V E V + F +
Sbjct:  131 GVVGAITPFNFPLNLITHKIGPAIATGNSVILHPSSKAPIAAIYLTKIIEHVLKQMDIPRGVFNLATGNGDIVGDEISKNDKINMVSFTGSVEIG---ESISKNAKMKKVTLELGGNNPMIVLKDSDIKLAAKSAVKSKFLNAGQVCISVGQVLVEEEVLETFTK 292

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAW (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAT (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAR (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAN (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=rocA PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAM (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rocA PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAE (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Newman) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAC (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAAB (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAA9 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=rocA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.047e-24
Identity = 64/168 (38.10%), Postives = 87/168 (51.79%), Query Frame = 1

Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE TP  A  + ++  EAGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKS 340

HSP 2 Score: 22.3274 bits (46), Expect = 1.047e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2

Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+  YI
Sbjct:  359 GPVINKKQFDKIKNYI 374

The following BLAST results are available for this feature:

BLAST of FC869243 vs. ExPASy Swiss-Prot

BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
LADH_METM7	9.813e-25	33.94	Lactaldehyde dehydrogenase OS=Methanococcus maripa...	[more]
ROCA_STAAW	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAT	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAR	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAN	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAM	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAE	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAC	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAAB	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]
ROCA_STAA9	1.047e-24	38.10	1-pyrroline-5-carboxylate dehydrogenase OS=Staphyl...	[more]

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Properties


Property Name	Value
Genbank description	C31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT