FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 65/162 (40.12%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+P+ L      PAL  GN +VLK   QTP  AL  A+L + AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K
Sbjct:  149 GVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRK 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBP (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 65/162 (40.12%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+P+ L      PAL  GN +VLK   QTP  AL  A+L + AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K
Sbjct:  149 GVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRK 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBO (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 65/162 (40.12%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+P+ L      PAL  GN +VLK   QTP  AL  A+L + AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K
Sbjct:  149 GVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRK 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GAPN_STRMU (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus mutans GN=gapN PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.855e-24
Identity = 63/164 (38.41%), Postives = 90/164 (54.88%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            G+   I P+N+P+ L   K+APAL  GN I  K   Q  ++ L +A+ F EAGLP GV N ++G G   G  +  H  V+ ++FTG    G+ + ++A    ++P+ LELGGK   I+ +DAD++   +      F   GQ C A  R  V E V DE VEK R
Sbjct:  145 GLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMA---GMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIR 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_GEOTN (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 65/167 (38.92%), Postives = 86/167 (51.50%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWNFP  +       AL  GNT++LK A  TP+ A   A++  EAGLP GVLN + G G   G  L  H     +SFTG  D G  + E AAK       LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  + E VYD+ + +
Sbjct:  173 GVGVVISPWNFPFAIMAGTTVAALVTGNTVLLKPASATPVVAYKFAEVLEEAGLPAGVLNYIPGSGAEVGDYLVEHPRTRFISFTGSRDVGIRIYERAAKVQPGQIWLKRVIAEMGGKDAIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNR 339          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD2_MYCS2 (Putative succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium smegmatis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 67/162 (41.36%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+P+ L      PAL  GN +V+K   QTP   L  A+L +EAGLP  +  VV G G   G A+  + D   L FTG   TG+ + E   +  L   + ELGGK+P I+   A +D A + A  A F N GQ C +  R YV   V DEF  K
Sbjct:  149 GVVGVISPWNYPMALSISDSIPALLAGNAVVVKPDSQTPYCTLANAELLYEAGLPRDLFAVVPGPGSVVGTAIVENCDY--LMFTGSTATGRTLAEQCGR-RLIGFSAELGGKNPMIVTRGAKLDVAAKAATRACFSNAGQLCISIERIYVERAVADEFTAK 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_AERHH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=astD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.870e-24
Identity = 65/162 (40.12%), Postives = 88/162 (54.32%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E TP+ A  + K++ EAGLP GVLN+V G   T G ALA + D+D L FTG   TG  + +  A    K + LE+GG +P I+ D +D+D AV     + F   GQ C    R +V   V  + + K
Sbjct:  139 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELTPMVAEAMLKIWQEAGLPKGVLNLVQGEVDT-GKALAGNPDIDGLFFTGSSRTGHFLHQQFAGQPGKILALEMGGNNPLIVKDVSDIDGAVHAIVQSAFITSGQRCTCSRRLFVERSVQGDALVK 299          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD2_MYCUA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium ulcerans (strain Agy99) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 65/162 (40.12%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+P+ L      PAL  GN +VLK   QTP  AL  A+L + AGLP  +  +V G G   G A+A + D   L FTG   TG  + E A +  L   + ELGGK+  I+    ++D+  + A  A F N GQ C +  R YV + + DEF  K
Sbjct:  149 GVVGVISPWNYPMTLTASDSVPALIAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAIADNCDY--LMFTGSSATGSRLAERAGR-RLIGFSAELGGKNAMIVTRGVNLDKVAKAATRACFSNAGQLCISIERIYVEKDIADEFTRK 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_GEOSW (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=rocA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.619e-24
Identity = 64/167 (38.32%), Postives = 87/167 (52.10%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWNFP  +       +L  GNT++LK A  TP+ A   A++  EAGLP GVLN + G G   G  L  H     +SFTG  D G  + E AAK +     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  + E VYD+ + +
Sbjct:  173 GVGVVISPWNFPFAIMAGTTVASLVTGNTVLLKPASATPVVAYKFAEVLEEAGLPAGVLNYIPGSGAEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDGIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNR 339          

HSP 2 Score: 21.557 bits (44), Expect = 6.619e-24
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 2
Query:  545 GPQIDPEQFEKVLKYI 592
            GP ID   + K+++YI
Sbjct:  360 GPVIDQSAYNKIMEYI 375          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ROCA_STAHJ (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rocA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.620e-24
Identity = 64/168 (38.10%), Postives = 86/168 (51.19%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKA 489
            G    I PWNFP  +        +  GNT++LK AE T LTA  + ++  EAGLP GV+N V G     G  L   +    ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH  VYDE +EKA
Sbjct:  173 GTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTVLTAYKLIEILEEAGLPKGVVNFVPGDPKEIGDYLVDSVHTHFVTFTGSRATGTRIYERSAVVQEGQTFLKRVIAEMGGKDAIVVDENIDTDLAAESIITSAFGFSGQKCSACSRAIVHSSVYDEVLEKA 340          

HSP 2 Score: 24.2534 bits (51), Expect = 6.620e-24
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  545 GPQIDPEQFEKVLKYI 592
            GP I+ +QF+K+ KYI
Sbjct:  359 GPVINKKQFDKIKKYI 374          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GABD2_MYCTA2.186e-2440.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBP2.186e-2440.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBO2.186e-2440.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GAPN_STRMU2.855e-2438.41NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ROCA_GEOTN3.729e-2438.921-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
GABD2_MYCS23.729e-2441.36Putative succinate-semialdehyde dehydrogenase [NAD... [more]
ASTD_AERHH4.870e-2440.12N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
GABD2_MYCUA6.360e-2440.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
ROCA_GEOSW6.619e-2438.321-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
ROCA_STAHJ6.620e-2438.101-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
back to top