FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOL6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O6 GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.384e-23
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRATGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFL 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_COLP3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.384e-23
Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTIV K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALASH  +D L FTG  +TG I+ E  A    K + LE+GG +P ++ D +D+D  V     + F   GQ C    R ++
Sbjct:  141 GVVAIFGPYNFPGHLPNGHIVPALIAGNTIVFKPSELTPRVAQEMLKLWEQAGLPNGVINLVQGEVET-GKALASHKLIDGLFFTGSSNTGHILHEQFAGQPGKILALEMGGNNPLVVKDVSDIDAVVHDIVQSAFVTTGQRCTCARRLFI 290          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_BACSK (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus clausii (strain KSM-K16) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I P+NFP+++  W    A+  GNT VLK++E+TPL A  +  L HE GLP GVLN+V+G G      L +H DV+ +SF G     + V E    +N K V    G K+  ++  D ++D+ V+    A F + G+ C A S   V E V D F+EK
Sbjct:  146 GVVAGITPFNFPMMVPLWMFPLAIAAGNTFVLKTSERTPLLAEQLVSLMHEVGLPRGVLNLVNG-GKAVVNGLLNHPDVEAISFVGSEPVARYVYE-TGTANGKRVQALAGAKNHAVVLADCELDKTVQGVIGAAFASSGERCMACSVVAVVEEVADAFIEK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_PSEA6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=astD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 63/160 (39.38%), Postives = 86/160 (53.75%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFV 480
            GV     P+NFP  L    + PAL  GN IV K ++ TPL A    +L+ +AGLP GVLN+V G   T G ALA+H D+D L FTG   TGKI+ E  A    K + LE+GG +P I+ D +D+D  V     + F   GQ C    + ++      + +
Sbjct:  139 GVVAVFGPYNFPGHLPNGHIVPALLAGNCIVFKPSDLTPLVAERTVQLWEKAGLPKGVLNLVQGEVET-GKALAAHPDLDGLFFTGSSRTGKILHEQYAGHPGKILALEMGGNNPLIVKDISDIDATVHDIIQSAFVTSGQRCTCARKLFLENNTQGDAI 297          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOL5 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGDAVMRLWQQAGLPPGVLNLVQG-GRATGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFL 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO27 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFL 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_BACHK (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus thuringiensis subsp. konkukian GN=iolA2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFP+++  W    A+ CGNT VLK +E+TPL A  +A+L  EAGLP GVLN+V+G        L  H  V  +SF G     + V +   + NLK V    G K+  I+ +DA+++ A +    A F + G+ C A S   V E + D+ VE+
Sbjct:  146 GVIGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLAARLAELAEEAGLPKGVLNIVNGAHDVVN-GLLEHKLVKAISFVGSQPVAEYVYKKGTE-NLKRVQALAGAKNHSIVLNDANLELATKQIISAAFGSAGERCMAASVVTVEEEIADQLVER 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_BACAN (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus anthracis GN=iolA2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFP+++  W    A+ CGNT VLK +E+TPL A  +A+L  EAGLP GVLN+V+G        L  H  V  +SF G     + V +   + NLK V    G K+  I+ +DA+++ A +    A F + G+ C A S   V E + D+ VE+
Sbjct:  146 GVIGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLAARLAELAEEAGLPKGVLNIVNGAHDVVN-GLLEHKLVKAISFVGSQPVAEYVYKKGTE-NLKRVQALAGAKNHSIVLNDANLELATKQIISAAFGSAGERCMAASVVTVEEEIADQLVER 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_BACAH (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus thuringiensis (strain Al Hakam) GN=iolA2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFP+++  W    A+ CGNT VLK +E+TPL A  +A+L  EAGLP GVLN+V+G        L  H  V  +SF G     + V +   + NLK V    G K+  I+ +DA+++ A +    A F + G+ C A S   V E + D+ VE+
Sbjct:  146 GVIGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLAARLAELAEEAGLPKGVLNIVNGAHDVVN-GLLEHKLVKAISFVGSQPVAEYVYKKGTE-NLKRVQALAGAKNHSIVLNDANLELATKQIISAAFGSAGERCMAASVVTVEEEIADQLVER 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOUT (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGDAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFL 285          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_ECOL65.384e-2341.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_COLP35.384e-2341.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA2_BACSK7.032e-2338.89Methylmalonate semialdehyde dehydrogenase [acylati... [more]
ASTD_PSEA67.032e-2339.38N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOL57.032e-2341.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO277.032e-2341.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA2_BACHK9.184e-2338.89Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACAN9.184e-2338.89Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACAH9.184e-2338.89Methylmalonate semialdehyde dehydrogenase [acylati... [more]
ASTD_ECOUT9.184e-2341.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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