FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO81 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=astD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGDAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHHQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFL 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO45 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGDAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFL 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GAPN_ARATH (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Arabidopsis thaliana GN=ALDH11A3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 64/164 (39.02%), Postives = 90/164 (54.88%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            GV   I P+N+P+ L   K+APAL  GN++VLK   Q  ++ L++   FH AG P G+++ ++G G   G  L  H  V+ +SFTG  DTG     ++ K+ + P+ +ELGGK   I+ DDAD+D          F   GQ C A     V E V DE VEK +
Sbjct:  160 GVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSCLHMVHCFHLAGFPKGLISCITGKGSEIGDFLTMHPAVNCISFTGG-DTG---ISISKKAGMIPLQMELGGKDACIVLDDADLDLVASNIIKGGFSYSGQRCTAVKVVLVMESVADELVEKVK 319          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHIBS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=astD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHIB3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=astD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHEHH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=astD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 64/153 (41.83%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALA+H  +D L FTG   TG I+ +  A    K + LE+GG +P II D AD   AV     + + + GQ C    R YV +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGEVET-GKALAAHPQIDGLFFTGSSRTGHILHQQYAGDPGKILALEMGGNNPLIIKDVADTKAAVHDIIQSAYISAGQRCTCARRLYVEK 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOSM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOLC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=astD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  ++   +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLRRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO7I (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_LACCA (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Lactobacillus casei GN=iolA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFP+++  W    A+  GNT +LK +E+TPLT+  + +LF EAGLP GVLN+V+G        L  H D+  +SF G    G+ V +     +LK V    G K+  I+  DAD+D AV+    + F + G+ C A S   + + + D+F+ K
Sbjct:  148 GVVGGITPFNFPMMVPCWMFPMAVATGNTFILKPSEKTPLTSQRLVELFQEAGLPDGVLNIVNGAVDVVNGIL-DHPDIKAISFVGSERVGEYVYK-RGSDHLKRVQALTGAKNHTIVLADADLDAAVKGIISSSFGSAGERCMATSVLVLQDEIADKFMAK 307          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_ECO819.184e-2341.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO459.184e-2341.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
GAPN_ARATH1.200e-2239.02NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ASTD_SHIBS1.200e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHIB31.200e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEHH1.200e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOSM1.200e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOLC1.200e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO7I1.200e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA_LACCA1.567e-2237.65Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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