FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_BACWK (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=iolA2 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 64/162 (39.51%), Postives = 88/162 (54.32%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I P+NFP+++  W    A+ CGNT VLK +E+TPL A  +A+LF EAGLP GVLN+V G        L  + DV  +SF G     + + + AA +N K V    G K+  I+  DAD+   V+    A F + G+ C A +   V E V DE V +
Sbjct:  144 GVIAGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLANRIAELFKEAGLPDGVLNIVHGAHDVVNGIL-DNEDVKAVSFVGSQPVAEYIYKTAA-ANGKRVQALAGAKNHSIVLKDADLSSTVKEITSAAFGSAGERCMAAAVVVVEEDVADELVNR 303          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GAPN_PEA (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Pisum sativum GN=GAPN PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 66/164 (40.24%), Postives = 89/164 (54.27%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            GV   I P+N+P+ L   K+APAL  GN+IVLK   Q  + AL++   FH AG P G+++ V+G G   G  L  H  V+ +SFTG  DTG  + +   KS + P+ +ELGGK   I+ +DAD+D          F   GQ C A     V E V D  VEK +
Sbjct:  160 GVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGG-DTGIAISK---KSGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVK 319          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHIFL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shigella flexneri GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHIF8 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHIDS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=astD PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_KLEP7 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +E TP +   V KL+ +AGLP GVLN+V G G   G AL+   D+D L FTG   TG  +    A    K + LE+GG +P I+ D  DVD  V L   + F   GQ C    R  V
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPRSGEAVVKLWQQAGLPAGVLNLVQG-GRETGEALSGQADIDGLLFTGSSTTGFHLHRQLAGQPQKILALEMGGNNPLIVDDPRDVDAVVHLTIQSAFITAGQRCTCARRLLV 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_IDILO (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Idiomarina loihiensis GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP+ A    KL+ +AG+P GVLN+V G   T G AL++H  +D L FTG  +TG ++ +       K + LE+GG +P ++ + ADVD AV     + F   GQ C    R ++ +
Sbjct:  139 GVVAVYGPYNFPGHLPNGHIVPALIAGNTVVFKPSELTPMVAQETVKLWEKAGIPAGVLNLVQGEVDT-GKALSAHPQIDGLYFTGSSNTGHLLHKQFGGRPDKILALEMGGNNPLLVTNVADVDAAVHNIVQSAFITSGQRCTCARRLFIED 290          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOSE (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOLU (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOLI (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain K12) GN=astD PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IOLA2_BACWK1.567e-2239.51Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GAPN_PEA1.567e-2240.24NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ASTD_SHIFL1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHIF81.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHIDS1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_KLEP71.567e-2241.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_IDILO1.567e-2238.56N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOSE1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOLU1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOLI1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
back to top