FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOHS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECODH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECOBW (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO8A (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO55 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO24 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=astD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDH2_BACSU (Probable aldehyde dehydrogenase ywdH OS=Bacillus subtilis GN=ywdH PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 65/159 (40.88%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   16 IVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            I PWN+PL L    +  A+  GNT+VLK +E TP  +  ++KL      P   + +  G GP    AL      D + FTG    GKIV E AAK  L PVTLELGGKSP I+  DAD+  A +   F  F N GQ C A    +VHE +  +  E+ +
Sbjct:  111 IAPWNYPLQLALSPLIGAIAAGNTVVLKPSEYTPAVSAILSKLISSV-FPTDYVAMAEG-GPDVSTALLQQ-PFDYIFFTGSVAVGKIVMEAAAKQ-LIPVTLELGGKSPCIVHKDADIQLAAKRIVFGKFTNAGQTCIAPDYLFVHEDIKTKLTEEMK 265          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: LADH_METJA (Lactaldehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=MJ1411 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEA----GLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            G+ G I P+NFPL L   K+APA+  GN IV   + + PL  + +AK+   A     +P GV N+++G G   G  +  +  V+ +SFTG    G+++ +   K+  K + LELGG +P I+  DAD+++AV       F   GQ C +     V E + D+F+E
Sbjct:  131 GIVGAITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITK---KAGFKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIE 292          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_VIBFM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=astD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+VLK +EQTP T+  + KL+ +AGLP GV+N+V G   T G ALA+   +D L FTG  +TG I+    A    K + LE+GG +P +I     D+D  V     + F + GQ C    R YV E
Sbjct:  136 GVMAVFGPYNFPGHLPNGHIVPALLAGNTVVLKPSEQTPWTSEVIMKLWQKAGLPKGVINLVQGARST-GEALANAKGIDGLLFTGSANTGHILHRQFAGDTGKMLALEMGGNNPMVISKAFGDLDATVYTIVQSAFISAGQRCTCARRLYVPE 288          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALTY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella typhimurium GN=astD PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDAANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_ECOHS1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECODH1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOBW1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO8A1.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO551.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO241.567e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ALDH2_BACSU1.567e-2240.88Probable aldehyde dehydrogenase ywdH OS=Bacillus s... [more]
LADH_METJA2.046e-2235.15Lactaldehyde dehydrogenase OS=Methanocaldococcus j... [more]
ASTD_VIBFM2.046e-2241.56N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALTY2.046e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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