FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO5E (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=astD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GCETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ECO57 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O157:H7 GN=astD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 63/146 (43.15%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNTI+ K +E TP +   V +L+ +AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG-GCETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus kaustophilus GN=iolA1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 63/151 (41.72%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV   I P+NFP+++  W    A+ CGNT VLK +E+TP+ A  +A+LF EAG PPGVLNVV G       AL  H D+  +SF G     K V E  A    K V    G K+  I+  DADV+ AV+    + F + GQ C A S   +
Sbjct:  148 GVVAGITPFNFPMMVPLWMFPLAIVCGNTFVLKPSERTPILANKLAELFTEAGAPPGVLNVVHGAHEVVN-ALIDHEDIRAISFVGSQPVAKYVYERTAAQG-KRVQALSGAKNHHIVMPDADVETAVQHVISSAFGSAGQRCMACSAVVI 296          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD_DEIRA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Deinococcus radiodurans GN=ssdA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 65/162 (40.12%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I PWN+PL       AP L  GNT++LK +E  P +AL + +LFH+AG+P G    +          +A H  V  +S TG    G  V ELA + +LK   LELGG  PFI+ D  D+D  V+ A      N GQ C A  R  V + +YDEFV +
Sbjct:  134 GVLLGIEPWNYPLYQVVRFAAPNLVVGNTVLLKHSELCPQSALALEQLFHDAGVPQGAYTNLFLRIADIEQVIA-HPAVQGVSLTGSERAGASVAELAGR-HLKKCVLELGGSDPFIVLDAEDLDTTVKAAATGRLSNTGQACIAAKRLMVVDDLYDEFVSR 293          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SPHAL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Sphingopyxis alaskensis GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 59/166 (35.54%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHV 498
            G    + P+NFP  L    + PAL  GN++V K +E+TP     + +L H AG+P  VL +V G GP  G ALA+H  +D L FTG   TG  +    A    K + LE+GG +P + +D AD+  A  L   + F + GQ C    R  V + + D  + + R +
Sbjct:  122 GALAVLGPYNFPAHLPNGHIVPALIAGNSVVFKPSEKTPAVGAKLVELLHSAGVPQEVLRLVVG-GPDTGKALAAHPGIDGLLFTGSARTGLALNRQFAGQPGKMLALEMGGNNPIVAWDTADIRTAAILIVQSAFLSAGQRCSNARRLIVKDSLADALIAEVREL 286          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALPB (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALNS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella newport (strain SL254) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALHS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALDC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ENTS8 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 64/151 (42.38%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +E TP T   V KL+ +AGLP GVLN+V G   T G AL++  ++D L FTG   TG  +    A    K + LE+GG +P I+ D  D+D AV LA  + F   GQ C    R  V
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLVFKPSELTPHTGEAVMKLWEQAGLPAGVLNLVQGARAT-GQALSARPELDGLLFTGSAGTGYQLHRQLAGQPEKILALEMGGNNPLIVEDPDDIDGAVHLAIQSAFITAGQRCTCARRLLV 285          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_ECO5E2.046e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO572.046e-2243.15N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA1_GEOKA2.672e-2241.72Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GABD_DEIRA2.672e-2240.12Succinate-semialdehyde dehydrogenase [NADP+] OS=De... [more]
ASTD_SPHAL2.672e-2235.54N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALPB2.672e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALNS2.672e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALHS2.672e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALDC2.672e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ENTS82.672e-2242.38N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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