FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURPS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P ++ D  D+D AV  A  + F + GQ C    R  V    + D F+E+
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFLER 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURP6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P ++ D  D+D AV  A  + F + GQ C    R  V    + D F+E+
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFLER 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURP1 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P ++ D  D+D AV  A  + F + GQ C    R  V    + D F+E+
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFLER 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURP0 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P ++ D  D+D AV  A  + F + GQ C    R  V    + D F+E+
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFLER 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURMS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P ++ D  D+D AV  A  + F + GQ C    R  V    + D F+E+
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFLER 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURMA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia mallei GN=astD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 62/163 (38.04%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P ++ D  D+D AV  A  + F + GQ C    R  V    + D F+E+
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFLER 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_GEOTN (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=iolA2 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 65/164 (39.63%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            GV   I P+NFP+++  W    A+ CGNT VLK +E+TPL A  +A+LF EAGLP GVLN+V G        L  H D+  +SF G     + V + AA    K V    G K+  I+  DAD+D AV     A F + G+ C A S       + DE VE+ +
Sbjct:  144 GVVAGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLANRLAELFTEAGLPAGVLNIVHGAHEVVNGIL-EHKDIKAVSFVGSQPVAEYVYKTAAAYG-KRVQALAGAKNHSIVMPDADLDMAVTNIINAAFGSAGERCMACSVVVAVGDIADELVERLK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD1_MYCPA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium paratuberculosis GN=gabD1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 62/162 (38.27%), Postives = 81/162 (50.00%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   ++PWNFPL       APAL  GN  +LK A   P +ALY+A +    G P G    +     +A   +     V   + TG    G+ V  +A    +KP  LELGG  PFI+   AD+D+AV+ A  A   N GQ C A  R  VH  +YD FV+K
Sbjct:  126 GVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLL-VPSSAVERILRDPRVAAATLTGSEPAGQSVAAIAG-DEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDAFVDK 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD1_MYCA1 (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium avium (strain 104) GN=gabD1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 62/162 (38.27%), Postives = 81/162 (50.00%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   ++PWNFPL       APAL  GN  +LK A   P +ALY+A +    G P G    +     +A   +     V   + TG    G+ V  +A    +KP  LELGG  PFI+   AD+D+AV+ A  A   N GQ C A  R  VH  +YD FV+K
Sbjct:  126 GVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLL-VPSSAVERILRDPRVAAATLTGSEPAGQSVAAIAG-DEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDTFVDK 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_VIBPA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio parahaemolyticus GN=astD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 63/152 (41.45%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +EQTP T     KL+ EAGLP GV+N+V G   T G ALA    +D + FTG  +TG I+    A    K + LE+GG +P +I D+  D+D  V     + F + GQ C    R YV
Sbjct:  136 GVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWEEAGLPKGVINLVQGAKET-GIALADAKGIDGILFTGSANTGHILHRQFAGQPGKMLALEMGGNNPMVISDNYGDLDATVYTIIQSAFISAGQRCTCARRLYV 286          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_BURPS2.672e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURP62.672e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURP12.672e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURP02.672e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURMS2.672e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURMA2.672e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA2_GEOTN3.490e-2239.63Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GABD1_MYCPA3.490e-2238.27Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
GABD1_MYCA13.490e-2238.27Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
ASTD_VIBPA3.490e-2241.45N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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