FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALEP (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=astD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 64/153 (41.83%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A+ D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANTDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALAR (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=astD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 64/155 (41.29%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERV 465
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+   D+D L FTG   TG  +    +    K + LE+GG +P II D  D+D AV L   + F   GQ C    R  V + V
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGHALSLLDDLDGLLFTGSASTGYQLHRQLSGQPKKILALEMGGNNPLIIEDAEDIDAAVHLTLQSAFITAGQRCTCARRLLVKQGV 289          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ESCF3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=astD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 62/146 (42.47%), Postives = 83/146 (56.85%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQ-CCCA 435
            GV     P+NFP  L    + PAL  GNT++ K +E TP +   V +L+ +AGLP GVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II D AD+D AV L   + F   GQ C CA
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTVIFKPSELTPWSGEAVMRLWQQAGLPSGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDDVADIDAAVHLTIQSAFVTAGQRCTCA 280          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURXL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=astD PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 63/167 (37.72%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV-HERVYDEFVEKARHV 498
            GV     P+NFP  L    + PAL  GN +V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I   ADVD AV     + F + GQ C    R +V ++   D F+E+   V
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNAVVFKPSELAPGVAALTVQIWRDAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGPVADVDAAVHHTIQSAFLSAGQRCTCARRIFVPNDAAGDRFLERFTEV 302          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURCJ (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=astD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 62/163 (38.04%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++  AGLPPGVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  DVD AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQAAGLPPGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDVDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA1_OCEIH (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Oceanobacillus iheyensis GN=iolA1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 59/162 (36.42%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TP+ A  + +LF+EAG P GVLN+V G G        +H D++ +SF G     K V +    ++ K V    G K+  ++  D DV++ ++    A F + G+ C A S   V + + DEF+EK
Sbjct:  146 GVVAGITPFNFPMMVPLWMFPLAIACGNTFVLKTSERTPILAERLVELFYEAGFPKGVLNLVHG-GKEVVNRFLTHPDIEAVSFVGSEPVAKHVYQ-TGTAHGKRVQALAGAKNHAVVMPDCDVEKTIQGVLGAAFGSSGERCMACSVVAVVDDIADEFLEK 305          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_VIBHB (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=astD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV-----HERVYDEFVEKARHVQ 501
            GV     P+NFP  L    + PAL  GNT+V K +EQTP T     KL+ E GLP GV+N+V G   T G ALA    +D + FTG  +TG ++    A    K + LE+GG +P +I D+  D+D  V     + F + GQ C    R Y+      + V  + VE  R+++
Sbjct:  136 GVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWEEVGLPKGVINLVQGAKET-GIALADAKGIDGVLFTGSANTGHVLHRQFAGQPGKMLALEMGGNNPMVISDNYGDLDATVYTIIQSAFISAGQRCTCARRLYIPFGDKGDAVITKLVEATRNIR 307          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_CITK8 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=astD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 62/151 (41.06%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+ +AGLPPGVLN+V G G   G AL++   +D L FTG  +TG  +    +    K + LE+GG +P II +  D+D AV L   + F   GQ C    R  V
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGEAVMKLWQQAGLPPGVLNLVQG-GRETGQALSALDALDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIENPEDIDAAVHLTIQSAFVTAGQRCTCARRLLV 285          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACHD (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus halodurans GN=iolA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFP+++  W    A+ CGNT VLK +E+TPL A  +A+LF EAGLP GVLN+V G        L  H DV  +SF G     + V + A++   K V    G K+  I+  DAD+D AV     A + + G+ C A +       V +  +EK
Sbjct:  147 GVVGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLANRLAELFTEAGLPEGVLNIVHGAHDVVN-GLLEHPDVKAISFVGSQPVAEYVYKTASQHG-KRVQALAGAKNHSIVMPDADLDGAVNQIVNAAYGSAGERCMAAAVVVAVGEVAEPLMEK 306          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA1_BACSK (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Bacillus clausii (strain KSM-K16) GN=iolA1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 63/164 (38.41%), Postives = 88/164 (53.66%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAR 492
            GV G I P+NFP+++  W    A+  GN  +LK +E+TPL    +A L  EAG+P GV NVV G        L  H D+  +SF G    G+ V + A++ NLK V    G K+  I+ +DAD+D AV     A F + G+ C A +   V E + D FV K +
Sbjct:  148 GVVGGIAPFNFPMMVPCWMFPMAIALGNAFLLKPSERTPLLTEKLADLLTEAGVPDGVFNVVYGAHDVVNGML-EHPDIKAISFVGSKPVGEYVYKKASE-NLKRVQALTGAKNHTIVLNDADLDDAVTNIAGAAFGSAGERCMACAVVTVEEGIADAFVAKLK 309          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_SALEP5.953e-2241.83N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALAR5.953e-2241.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ESCF35.953e-2242.47N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURXL5.953e-2237.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCJ5.953e-2238.04N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA1_OCEIH7.775e-2236.42Methylmalonate semialdehyde dehydrogenase [acylati... [more]
ASTD_VIBHB7.775e-2236.99N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_CITK87.775e-2241.06N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA_BACHD1.015e-2138.89Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_BACSK1.015e-2138.41Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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