FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTU (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis GN=gabD1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 66/165 (40.00%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   ++PWNFPL       APAL  GN  +LK A   P  ALY+A +    G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K
Sbjct:  125 GVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDK 284          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTA (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 66/165 (40.00%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   ++PWNFPL       APAL  GN  +LK A   P  ALY+A +    G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K
Sbjct:  125 GVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDK 284          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBP (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 66/165 (40.00%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   ++PWNFPL       APAL  GN  +LK A   P  ALY+A +    G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K
Sbjct:  125 GVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDK 284          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBO (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis GN=gabD1 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 66/165 (40.00%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   ++PWNFPL       APAL  GN  +LK A   P  ALY+A +    G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K
Sbjct:  125 GVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDK 284          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=astD PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 61/152 (40.13%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +EQTP T     KL+  AGLP GV+N+V G G   G ALA    +D L FTG  +TG ++    A    K + LE+GG +P +I D   D+D  V     + F + GQ C    R Y+
Sbjct:  136 GVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKGIDGLLFTGSANTGHLLHRQFAGQPGKMLALEMGGNNPMVITDHYGDLDATVYTIIQSAFISAGQRCTCARRLYI 286          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVU (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus GN=astD PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 61/152 (40.13%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +EQTP T     KL+  AGLP GV+N+V G G   G ALA    +D L FTG  +TG ++    A    K + LE+GG +P +I D   D+D  V     + F + GQ C    R Y+
Sbjct:  136 GVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKGIDGLLFTGSANTGHLLHRQFAGQPGKMLALEMGGNNPMVITDHYGDLDATVYTIIQSAFISAGQRCTCARRLYI 286          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHEWM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=astD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALASH  +D L FTG   TG I+ +  A    K + LE+GG +P II    D   AV     + + + GQ C    R YV +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGEVET-GKALASHEQIDGLFFTGSSRTGHILHQQYAGEPGKILALEMGGNNPLIIKGVKDTKAAVHDIIQSAYISSGQRCTCARRLYVEK 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHESA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=astD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 62/153 (40.52%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  +  L+ +AGLP GV+N+V G   T G ALASH  +D L FTG   TG ++ +  A    K + LE+GG +P II   AD+  AV     + + + GQ C    R YV +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMVSLWEKAGLPAGVINLVQGEVDT-GKALASHPQLDGLFFTGSSRTGHLLHQQYAGHPGKILALEMGGNNPLIIKGVADIKAAVHDILQSAYISSGQRCTCARRLYVEQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHEPW (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=astD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALASH  +D L FTG   TG I+ +  A    K + LE+GG +P II    D   AV     + + + GQ C    R YV +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGEVET-GKALASHPQIDGLFFTGSSRTGHILHQQYAGDPGKILALEMGGNNPLIIKGVEDTKAAVHDIIQSAYISSGQRCTCARRLYVEK 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHEPC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=astD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALASH  +D L FTG   TG ++ +  A    K + LE+GG +P II    D+  AV     + + + GQ C    R YV +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVIFKPSELTPKVAELMVKLWDKAGLPAGVINLVQGEVDT-GKALASHPQIDGLFFTGSSRTGHLLHQQYAGHPGKILALEMGGNNPLIIKGVQDIKAAVHDILQSAYISSGQRCTCARRLYVEQ 287          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GABD1_MYCTU1.015e-2140.00Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCTA1.015e-2140.00Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBP1.015e-2140.00Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBO1.015e-2140.00Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
ASTD_VIBVY1.015e-2140.13N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBVU1.015e-2140.13N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEWM1.015e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHESA1.015e-2140.52N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEPW1.015e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEPC1.015e-2139.87N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
back to top