FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALTI (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella typhi GN=astD PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D  ++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDATNMDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURTA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=astD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 62/167 (37.13%), Postives = 87/167 (52.10%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKARHV 498
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ +AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P ++ +  D+D AV  A  + F + GQ C    R  V    + D FV +   V
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGEKDT-GVALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVVAEVEDIDAAVHHAIQSAFLSAGQRCTCARRILVPRGAFGDRFVARLADV 302          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD2_PSEHT (N-succinylglutamate 5-semialdehyde dehydrogenase 2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=astD2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PA+  GNT+V K +E TP  A +   L+ +AGLP GV+N+V G   T G ALA+H D+D L FTG  +TG ++ +  A    K + LE+GG +P II D  DV  AV     + F   GQ C    R ++
Sbjct:  137 GVVAIFGPYNFPGHLPNGHIVPAILAGNTVVFKPSELTPHVAQFTLSLWLKAGLPAGVINLVQGEIET-GKALAAHQDIDGLFFTGSSNTGHLLHKQFAGHPGKILALEMGGNNPLIIKDVNDVSAAVHDIIQSGFITSGQRCTCARRVFI 286          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GAPN_NICPL (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 64/162 (39.51%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I P+N+P+ L   K+APAL  GN++VLK   Q  +  L++   FH AG P G+++ V+G G   G  L  H  V  +SFTG  DTG  + +   K+ + P+ +ELGGK   I+ +DAD+D A        F   GQ C A     V E V D  VEK
Sbjct:  160 GVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVACLHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVHCISFTGG-DTGVAISK---KAGMIPLQMELGGKDACIVLEDADLDLAAGSIVKGGFSYSGQRCTAVKVVLVMESVADALVEK 317          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_YERPS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pseudotuberculosis GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +E TP TA    KL+ EAG+P GVLN+V G G   G ALA+  D+D L FTG   TG  +    A    K + LE+GG +  I+    D D  V LA  + F + GQ C    R  V
Sbjct:  150 GVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQEAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTGYHLHRQLAGQPEKMLALEMGGNNALIVEQVKDRDAVVNLAIQSAFISAGQRCTCSRRLLV 299          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_YERPB (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 63/151 (41.72%), Postives = 79/151 (52.32%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+V K +E TP TA    KL+ EAG+P GVLN+V G G   G ALA+  D+D L FTG   TG  +    A    K + LE+GG +  I+    D D  V LA  + F + GQ C    R  V
Sbjct:  150 GVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQEAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTGYHLHRQLAGQPEKMLALEMGGNNALIVEQVKDRDAVVNLAIQSAFISAGQRCTCSRRLLV 299          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALPC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D  ++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVTNMDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALA4 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella agona (strain SL483) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D  ++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GREIGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDATNMDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURCC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_SALTI1.015e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURTA1.015e-2137.13N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD2_PSEHT1.015e-2140.40N-succinylglutamate 5-semialdehyde dehydrogenase 2... [more]
GAPN_NICPL1.326e-2139.51NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ASTD_YERPS1.326e-2141.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_YERPB1.326e-2141.72N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALPC1.326e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALA41.326e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCH1.326e-2137.42N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCC1.326e-2137.42N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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