FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURCA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + D F+ +
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGDRFLAR 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURA4 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=astD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDE 474
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + E
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDLDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGE 293          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA1_BACWK (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Bacillus weihenstephanensis (strain KBAB4) GN=iolA1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K N K V    G K+  ++  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTK-NGKRVQALAGAKNHAVVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: GAPN_SCEVA (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Scenedesmus vacuolatus GN=GapN PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 62/157 (39.49%), Postives = 87/157 (55.41%), Query Frame = 1
Query:   16 IVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            I P+N+P+ L   K+APAL  GNT+VLK   Q  +  +++ K F  AGLP G +N+V+G G   G  L +H  V+ +SFTG  DTG  +   + K+ + P+ +ELGGK   I+  DAD+D A        F   GQ C A     V + + DE V K
Sbjct:    3 IPPFNYPVNLAVSKLAPALMAGNTVVLKPPSQGVVAGIHMIKCFQAAGLPAGTVNLVTGKGSEIGDFLTTHPAVNCISFTGG-DTGIAI---SRKAGMVPLQMELGGKDACIVCSDADLDLAATHIIKGGFSYSGQRCTAVKVVLVMQDIADELVRK 155          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHESH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=astD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 63/153 (41.18%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALASH  +D L FTG   TG I+ +  A    K + LE+GG +P II    D   AV     + + + GQ C    R YV +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGEVET-GKALASHPQIDGLFFTGSSRTGHILHQQYAGEPGKILALEMGGNNPLIIKGVKDSKAAVHDIIQSAYISSGQRCTCARRLYVEK 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_BURCM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=astD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 60/158 (37.97%), Postives = 83/158 (52.53%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDE 474
            GV     P+NFP  L    + PAL  GNT+V K +E  P  A    +++ EAGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++           + LE+GG +P +I +  D+D AV     + F + GQ C    R +V +  + E
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVIGEVEDLDAAVHHTIQSAFLSAGQRCTCARRIFVPQGAFGE 293          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_ALISL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=astD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYV 453
            GV     P+NFP  L    + PAL  GNT+VLK +EQTP T+  + KL+ +AGLP GV+N+V G   T G ALAS   +D L FTG  +TG I+    +    K + LE+GG +P +I     + + AV     + F + GQ C    R YV
Sbjct:  136 GVMAVFGPYNFPGHLPNGHIVPALLAGNTVVLKPSEQTPWTSEVIMKLWQQAGLPNGVINLVQGARET-GEALASAKGIDGLLFTGSANTGHILHRQFSGDTGKMLALEMGGNNPMVISKSFGEQEAAVYTIIQSAFISAGQRCTCARRLYV 286          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD2_SHEDO (N-succinylglutamate 5-semialdehyde dehydrogenase 2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=astD2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 61/153 (39.87%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  + KL+ +AGLP GV+N+V G   T G ALASH  +D L FTG   TG I+ +  A    K + LE+GG +P I+   +D   AV     + + + GQ C    R Y+ +
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAEEMLKLWDKAGLPKGVINLVQGEVET-GKALASHPQIDGLFFTGSSRTGHILHQQYAGHPGKILALEMGGNNPLIVKGVSDTKAAVHDIIQSAYISSGQRCTCARRLYIEQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA3_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 3 OS=Bacillus cereus (strain ZK / E33L) GN=iolA3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFV 480
            GV G I P+NFP+++  W    A+ CGNT VLK +E+TPL A  + +L  EAGLP GVLN+V+G        L  H  V  +SF G     + V +   + NLK V    G K+  I+  DA+++ A +    A F + G+ C A S   V E + D+ V
Sbjct:  146 GVIGGITPFNFPMMVPCWMFPLAIACGNTFVLKPSERTPLLAAKLVELAEEAGLPKGVLNIVNGAHDVVN-GLLEHKLVKAISFVGSQPVAEYVYKKGTE-NLKRVQALAGAKNHSIVLSDANLELATKQIISAAFGSAGERCMAASVVTVQEEIADQLV 303          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA2_BACLD (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I P+NFP+++  W    A+  GNT +LK +E+TPL    + +LF +AGLP GV NVV G        L  H ++  +SF G    G+ V +  ++ NLK V    G K+  I+ +DA+++  V     A F + G+ C A +   V E + DEF+EK
Sbjct:  144 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGIL-EHPEIKAISFVGSKPVGEYVYKKGSE-NLKRVQSLTGAKNHTIVLNDANLEDTVTNIIGAAFGSAGERCMACAVVTVEEGIADEFMEK 303          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_BURCA1.326e-2137.42N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURA41.326e-2137.97N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA1_BACWK1.732e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GAPN_SCEVA1.732e-2139.49NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ASTD_SHESH1.732e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCM1.732e-2137.97N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ALISL1.732e-2140.79N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD2_SHEDO1.732e-2139.87N-succinylglutamate 5-semialdehyde dehydrogenase 2... [more]
IOLA3_BACCZ2.262e-2138.13Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACLD2.262e-2137.04Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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