FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SHEFN (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=astD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 62/153 (40.52%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    + PAL  GNT+V K +E TP  A  + K + +AGLP GV+N+V G   T G ALASH  +D L FTG   TG I+ E  A    K + LE+GG +P I+    D   AV     + + + GQ C    R Y+ E
Sbjct:  136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKCWDKAGLPQGVVNLVQGEVET-GKALASHPQIDGLFFTGSSRTGHILHEQYAGLPGKILALEMGGNNPLIVKGVTDTKAAVHDIIQSAYISSGQRCTCARRLYIEE 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALPK (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=astD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    +  AL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVSALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_SALPA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Salmonella paratyphi A GN=astD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 63/153 (41.18%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHE 459
            GV     P+NFP  L    +  AL  GNT++ K +E TP T   V KL+  AGLP GVLN+V G G   G AL+S  D+D L FTG   TG  +    +    K + LE+GG +P II D A++D AV L   + F   GQ C    R  V +
Sbjct:  136 GVLAVFGPYNFPGHLPNGHIVSALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQG-GRETGQALSSLDDLDGLLFTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDVANIDAAVHLTLQSAFITAGQRCTCARRLLVKQ 287          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ASTD_CHRVO (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Chromobacterium violaceum GN=astD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 64/163 (39.26%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEK 486
            GV     P+NFP  L    + PAL  GN+++ K +E TP TA    KL+ EAGLP GV+ +V G   T G ALA H  +D L FTG   TG ++ +  +    K + LE+GG +P I+ + ADVD AV     + F + GQ C    R  V +  + D FV +
Sbjct:  137 GVVAVFGPYNFPGHLPNGHIVPALLAGNSVIFKPSELTPWTAEETVKLWAEAGLPAGVIGLVQGAKDT-GVALAGHEGLDGLFFTGSSATGALLHKQFSGRPDKILALEMGGNNPLIVGEVADVDGAVHHVIQSAFVSAGQRCTCARRLLVPQGEWGDAFVAR 298          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACCR (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=iolA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K   K V    G K+  I+  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTKHG-KRVQALAGAKNHAIVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACCQ (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain Q1) GN=iolA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K   K V    G K+  I+  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTKHG-KRVQALAGAKNHAIVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACC7 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain AH187) GN=iolA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K   K V    G K+  I+  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTKHG-KRVQALAGAKNHAIVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACC4 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain B4264) GN=iolA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K   K V    G K+  I+  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTKHG-KRVQALAGAKNHAIVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACC2 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain G9842) GN=iolA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K   K V    G K+  I+  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTKHG-KRVQALAGAKNHAIVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: IOLA_BACC1 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain ATCC 10987) GN=iolA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVE 483
            GV   I P+NFP+++  W    A+ CGNT VLK++E+TPL A  + +LF+EAG P GVLN+V G G     ++  + D+  +SF G     + V E   K   K V    G K+  I+  D ++++ V+    + F + G+ C A S   V + + DEF++
Sbjct:  146 GVVAGITPFNFPMMIPLWMFPLAIACGNTFVLKTSERTPLLAERLVELFYEAGFPKGVLNLVQG-GKDVVNSILENKDIQAVSFVGSEPVARYVYETGTKHG-KRVQALAGAKNHAIVMPDCNLEKTVQGVIGSAFASSGERCMACSVVAVVDEIADEFID 304          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_SHEFN2.262e-2140.52N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALPK2.262e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SALPA2.262e-2141.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_CHRVO2.262e-2139.26N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
IOLA_BACCR2.955e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACCQ2.955e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACC72.955e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACC42.955e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACC22.955e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_BACC12.955e-2135.40Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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