FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAA8 (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain NCTC 8325) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGNPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAA3 (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain USA300) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGNPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.780e-42
Identity = 86/163 (52.76%), Postives = 112/163 (68.71%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+PLL+ TWKVAPAL  G T VLK +E   LT L +  +  E GLP GVLN+++G GP AGA +ASH  VDK++FTG   TGK +   AA+  +KPV+LELGGKSP + FDD AD+D+AVE      F+N GQ C A SR  +HE++ + F+++
Sbjct:  154 GVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASLTCLELGAICEEIGLPSGVLNIITGLGPDAGAPIASHPHVDKIAFTGSTATGKTIMTAAAQM-VKPVSLELGGKSPLVTFDDVADIDKAVEWPMLGCFFNGGQVCSATSRLLLHEKIAEPFLDR 315          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAR (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MRSA252) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.780e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPNGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 79/162 (48.77%), Postives = 112/162 (69.14%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G ++PWN+PL++  WK A  LT GNT+VLK A+ TPLTAL  A+L  +AG+P GV+N++ G G   G  L+ H DV K+ FTG    GK + +  A SN+K V+LELGGKSP IIF D D+D+AV +   ++F+N+G+ C A  R ++ E ++DEFV++
Sbjct:  565 GVCGIVIPWNYPLMMLAWKTAACLTAGNTVVLKPAQVTPLTALKFAELSVKAGIPKGVINILPGAGSLIGQRLSDHPDVRKIGFTGSTPIGKQIMKSCAVSNVKKVSLELGGKSPLIIFHDCDLDKAVRMGMSSVFFNKGENCIAAGRLFLEESIHDEFVKR 726          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN +V K +E TPLTAL +A+++ EAG+P GV NVV G G + GA L  H D+ K+SFTG  +TGK V  LA  S+LK VT+ELGGKSP I+FDDAD+D+A ++A  A F++ GQ C  G+R +VH  + D F +K
Sbjct:  144 GVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDG-SVGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQK 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN +V K +E TPLTAL +A+++ EAG+P GV NVV G G + GA L  H D+ K+SFTG  +TGK V  LA  S+LK VT+ELGGKSP I+FDDAD+D+A ++A  A F++ GQ C  G+R +VH  + D F +K
Sbjct:  144 GVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDG-SVGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQK 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BURCA (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.036e-42
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN +V K +E TPLTAL +A+++ EAG+P GV NVV G G + GA L  H D+ K+SFTG  +TGK V  LA  S+LK VT+ELGGKSP I+FDDAD+D+A ++A  A F++ GQ C  G+R +VH  + D F +K
Sbjct:  144 GVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDG-SVGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQK 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN +V K +E TPLTAL +A+++ EAG+P GV NVV G G + GA L  H D+ K+SFTG  +TGK V  LA  S+LK VT+ELGGKSP I+FDDAD+D+A ++A  A F++ GQ C  G+R ++H  V D F +K
Sbjct:  144 GVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDG-SVGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFMHRSVKDAFTQK 304          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.764e-42
Identity = 83/162 (51.23%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV   I  WN+P+ +  WK APAL  GN +V K +E TPLTAL +A+++ EAG+P GV NVV G G + GA L  H D+ K+SFTG  +TGK V  LA  S+LK VT+ELGGKSP I+FDDAD+D+A ++A  A F++ GQ C  G+R +VH  + D F ++
Sbjct:  144 GVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALKLAEIYTEAGVPAGVFNVVQGDG-SVGALLTGHPDIAKVSFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLIVFDDADLDRAADIAVTANFFSSGQVCTNGTRVFVHRSIKDAFTQR 304          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ALDA_STAA81.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAA31.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
BADH_HORVU1.780e-4252.76Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
ALDA_STAAR1.780e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
FTHFD_XENLA3.036e-4248.7710-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
BETB_BURCH3.036e-4251.85Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCC3.036e-4251.85Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCA3.036e-4251.85Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCJ5.179e-4251.85Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURS36.764e-4251.23Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
back to top