FC869264

Overview
NameFC869264
Unique NameFC869264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BRAJA (GTP-binding protein era homolog OS=Bradyrhizobium japonicum GN=era PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 645
            + G+VA++G PNVGKSTL N ++G K++IV+ K QTT+  I GI      Q+IL DTPGI   K   LD  M+    S
Sbjct:   14 RCGFVALIGAPNVGKSTLVNALVGAKVTIVSRKVQTTRALIRGIVIENNAQIILVDTPGIFSPK-RRLDRAMVSTAWS 90          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_DEIDV (GTP-binding protein era homolog OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=era PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  415 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            SG+VA++GKPNVGKSTL N  +G K++  + +PQTT+  + GI +   +Q++  DTPG+ + K   L   M   V SA
Sbjct:   15 SGFVAIVGKPNVGKSTLLNSFLGTKVAPTSPRPQTTRRGVRGISTTDTHQIVFVDTPGLHKPK-DALGKYMNHEVHSA 91          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BRASB (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=era PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 630
            + G+VA++G PNVGKSTL N ++G K++IV+ K QTT+  I GI      Q+IL DTPGI   K   LD  M+
Sbjct:   14 RCGFVALIGAPNVGKSTLVNALVGSKVTIVSRKVQTTRALIRGIVIEGTSQIILVDTPGIFSPK-RRLDRAMV 85          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BORRA (GTP-binding protein era homolog OS=Borrelia recurrentis (strain A1) GN=era PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGI-IEKKIHMLDSMMMKNVRSA 648
            KSG+V+++G+P+ GKSTL N + G ++SI ++ PQTT+++I GI +    Q+I  DTPG  + KK    +  +M NV SA
Sbjct:    2 KSGFVSIIGRPSTGKSTLLNSICGHQISITSSTPQTTRNKIKGIFTDKRGQIIFIDTPGFHLSKK--NFNIALMNNVYSA 79          
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_BORDL (GTP-binding protein era homolog OS=Borrelia duttonii (strain Ly) GN=era PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  412 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGI-IEKKIHMLDSMMMKNVRSA 648
            KSG+V+++G+P+ GKSTL N + G ++SI ++ PQTT+++I GI +    Q+I  DTPG  + KK    +  +M NV SA
Sbjct:    2 KSGFVSIIGRPSTGKSTLLNSICGHQISITSSTPQTTRNKIKGIFTDKRGQIIFIDTPGFHLSKK--NFNIALMNNVYSA 79          
The following BLAST results are available for this feature:
BLAST of FC869264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
ERA_BRAJA6.601e-1147.44GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_DEIDV8.621e-1143.59GTP-binding protein era homolog OS=Deinococcus des... [more]
ERA_BRASB8.621e-1149.32GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_BORRA8.621e-1143.75GTP-binding protein era homolog OS=Borrelia recurr... [more]
ERA_BORDL8.621e-1143.75GTP-binding protein era homolog OS=Borrelia dutton... [more]

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Properties
Property NameValue
Genbank descriptionC31010C11EF AbioticL1 Citrus clementina cDNA clone C31010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869264 ID=FC869264; Name=FC869264; organism=Citrus clementina; type=EST; length=711bp
GAACCGATAAGAGAGAGAGATCGTTACTTGAGAGCAGGCGAATGAAATCA
ACATGAAAGCAAAGCTCCGATAATGGAGCTAGGTGTACACATATCCTCTT
CTTTTGGCAGTCTGTTCCCTCATTACAGCACATTAACAGCATATAGAGAA
ATTAAATTTGGGTTCCAAGGCAGAAGTAGTAGTATCACTTGTAGAAGCAA
TGAGCACCAAAGCCTTGTATTGTCAGAGAAAGAAGTACAGCAACAGAAGC
TTTGGAGTAACCAACGGGAAATGGACTTAGACGATGGTGATGAAATGGAA
TTTGACGATGCATCGTCGTTTCTATCTCTGTCTGAAAAACCAGACAGGAA
TATGGCTTCGCCGGACGACTACGAGATTGAAGAATTTGACTACGCCTCTC
ATCCAAATCACAAAAGCGGATATGTGGCAGTACTAGGGAAGCCAAATGTG
GGGAAAAGTACGCTCGCAAACCAAATGATCGGTCAAAAGCTCTCAATTGT
TACAAATAAGCCCCAAACTACAAAGCACCGTATTCTTGGTATCTGTTCTG
GTCCAGAGTATCAGATGATACTTTATGATACCCCTGGTATAATTGAGAAG
AAAATTCACATGTTGGACTCTATGATGATGAAGAATGTCCGCAGTGCTGG
GATTACGCTGACTGTATTGTTGTTCTCGTTGATGCTTGTAAGCTCCTGAA
GAATTGATGAA
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